Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0001840 Simmondsia chinensis HOM05D000896 ORTHO05D000594 1.5e-60 236.1 133 100.0
Sc22g0001910 Simmondsia chinensis HOM05D000896 ORTHO05D000594 1.3e-19 100.1 68 63.2
Sc22g0001900 Simmondsia chinensis HOM05D000896 ORTHO05D000594 3.7e-14 82.0 64 50.0
CAN.G1266.3 Capsicum annuum HOM05D000896 ORTHO05D000594 5.6e-10 68.2 84 42.9
Sc07g0008340 Simmondsia chinensis HOM05D000896 ORTHO05D000594 2.8e-09 65.9 82 41.5
Sc07g0008350 Simmondsia chinensis HOM05D000896 ORTHO05D000594 1.0e-08 63.9 83 38.6
Sopen03g038390 Solanum pennellii HOM05D000896 ORTHO05D000594 1.8e-08 63.2 78 38.5
Solyc03g119560.1 Solanum lycopersicum HOM05D000896 ORTHO05D000594 5.2e-08 61.6 67 43.3
CsaV3_5G027950 Cucumis sativus L. HOM05D000896 ORTHO05D000594 6.8e-08 61.2 87 36.8
Cpa.g.sc3.72 Carica papaya HOM05D000896 ORTHO05D000594 8.9e-08 60.8 75 36.0
MELO3C005306.2 Cucumis melo HOM05D000896 ORTHO05D000594 8.9e-08 60.8 87 35.6
Nitab4.5_0001582g0060 Nicotiana tabacum HOM05D000896 ORTHO05D000594 8.9e-08 60.8 81 39.5
RcHm_v2.0_Chr1g0380921 Rosa chinensis HOM05D000896 ORTHO05D000594 1.5e-07 60.1 79 41.8
CsaV3_5G028430 Cucumis sativus L. HOM05D000896 ORTHO05D000594 2.6e-07 59.3 73 35.6
MELO3C005283.2 Cucumis melo HOM05D000896 ORTHO05D000594 3.4e-07 58.9 79 36.7
DCAR_025815 Daucus carota HOM05D000896 ORTHO05D000594 3.4e-07 58.9 64 46.9
Oeu027561.1 Olea europaea HOM05D000896 ORTHO05D000594 4.4e-07 58.5 89 36.0
Oeu027562.1 Olea europaea HOM05D000896 ORTHO05D000594 4.4e-07 58.5 88 36.4
Ciclev10030180m.g Citrus clementina HOM05D000896 ORTHO05D000594 5.8e-07 58.2 84 35.7
CsaV3_5G027980 Cucumis sativus L. HOM05D000896 ORTHO05D000594 5.8e-07 58.2 87 33.3
Psat4g120360 Pisum sativum HOM05D000896 ORTHO05D000594 5.8e-07 58.2 85 34.1
Nitab4.5_0007441g0030 Nicotiana tabacum HOM05D000896 ORTHO05D000594 9.8e-07 57.4 78 38.5
Psat0s5759g0040 Pisum sativum HOM05D000896 ORTHO05D000594 9.8e-07 57.4 85 35.3
Psat4g122800 Pisum sativum HOM05D000896 ORTHO05D000594 9.8e-07 57.4 85 35.3
BcaC02g07983 Brassica carinata HOM05D000896 ORTHO05D000594 1.3e-06 57.0 75 42.7
BcaC02g07988 Brassica carinata HOM05D000896 ORTHO05D000594 1.3e-06 57.0 75 42.7
C04p61050 Brassica napus HOM05D000896 ORTHO05D000594 1.3e-06 57.0 75 42.7
C04p61100 Brassica napus HOM05D000896 ORTHO05D000594 1.3e-06 57.0 75 42.7
BolC4t27592H Brassica oleracea HOM05D000896 ORTHO05D000594 1.3e-06 57.0 75 42.7
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 1.3e-06 57.0 75 42.7
PGR044G0072 Punica granatum HOM05D000896 ORTHO05D000594 1.3e-06 57.0 73 37.0
Thecc.03G196900 Theobroma cacao HOM05D000896 ORTHO05D000594 1.3e-06 57.0 73 37.0
Duzib138G1815 Durio zibethinus HOM05D000896 ORTHO05D000594 1.7e-06 56.6 76 34.2
Prupe.1G539700 Prunus persica HOM05D031150 ORTHO05D000594 1.7e-06 56.6 85 34.1
PGR044G1241 Punica granatum HOM05D000896 ORTHO05D000594 1.7e-06 56.6 84 38.1
Sp4g13910 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.7e-06 56.6 73 38.4
Nitab4.5_0001681g0040 Nicotiana tabacum HOM05D000896 ORTHO05D000594 2.2e-06 56.2 79 36.7
SGA_v2.0_scaffold257G45696 Striga asiatica HOM05D000896 ORTHO05D000594 2.2e-06 56.2 67 35.8
SGA_v2.0_scaffold257G45705 Striga asiatica HOM05D000896 ORTHO05D000594 2.2e-06 56.2 67 35.8
Thecc.03G196400 Theobroma cacao HOM05D000896 ORTHO05D000594 2.2e-06 56.2 70 38.6
Aa31LG1G8400 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.9e-06 55.8 59 47.5
Nitab4.5_0000264g0110 Nicotiana tabacum HOM05D000896 ORTHO05D000594 2.9e-06 55.8 79 36.7
RcHm_v2.0_Chr1g0380951 Rosa chinensis HOM05D000896 ORTHO05D000594 2.9e-06 55.8 72 38.9
arahy.Tifrunner.gnm1.ann1.K5WR0Q Arachis hypogaea HOM05D011529 ORTHO05D000594 3.7e-06 55.5 79 36.7
arahy.Tifrunner.gnm1.ann1.TNG32Q Arachis hypogaea HOM05D011529 ORTHO05D000594 3.7e-06 55.5 79 36.7
CsaV3_5G028440 Cucumis sativus L. HOM05D000896 ORTHO05D000594 3.7e-06 55.5 73 31.5
TWI34G0441 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 3.7e-06 55.5 68 41.2
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 4.9e-06 55.1 75 41.3
Eucgr.I00861 Eucalyptus grandis HOM05D000896 ORTHO05D000594 4.9e-06 55.1 78 39.7
Oeu027558.1 Olea europaea HOM05D000896 ORTHO05D000594 4.9e-06 55.1 77 39.0
CsaV3_5G028220 Cucumis sativus L. HOM05D000896 ORTHO05D000594 6.4e-06 54.7 85 31.8
Potri.015G014200 Populus trichocarpa HOM05D000896 ORTHO05D000594 6.4e-06 54.7 78 35.9
Potri.015G014700 Populus trichocarpa HOM05D000896 ORTHO05D000594 6.4e-06 54.7 78 35.9
Sc07g0008470 Simmondsia chinensis HOM05D000896 ORTHO05D000594 6.4e-06 54.7 80 36.2
Aa31LG1G8310 Aethionema arabicum HOM05D000896 ORTHO05D000594 8.3e-06 54.3 62 48.4
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 8.3e-06 54.3 66 40.9
PGR044G1601 Punica granatum HOM05D000896 ORTHO05D000594 8.3e-06 54.3 69 40.6
PGR102G2336 Punica granatum HOM05D000896 ORTHO05D000594 8.3e-06 54.3 68 36.8


User provided reference genes

Program Settings