Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.5e-121 437.6 208 100.0
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-86 323.6 209 74.6
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.2e-81 305.4 212 70.3
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-74 281.2 212 64.6
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-54 217.2 222 50.5
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.8e-54 214.2 222 50.5
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.2e-52 209.1 210 49.0
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.2e-52 209.1 209 51.7
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-43 180.6 215 47.0
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-42 176.8 191 50.3
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-39 166.8 203 45.3
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-36 157.1 215 41.9
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 3.2e-36 156.0 217 39.2
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.1e-36 155.6 217 40.6
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.1e-36 155.6 199 43.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 5.4e-36 155.2 217 41.9
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.4e-36 155.2 217 42.9
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 7.1e-36 154.8 216 42.1
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.2e-35 154.1 218 40.4
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.7e-35 152.9 218 39.4
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 4.6e-35 152.1 214 42.5
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.0e-35 151.8 215 40.0
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.8e-35 151.4 215 42.3
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.0e-34 151.0 218 37.6
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-34 150.6 215 39.5
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-34 149.8 217 40.6
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.1e-34 148.7 214 39.7
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 6.6e-34 148.3 219 37.9
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.6e-33 145.2 217 38.7
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-33 145.2 215 41.4
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.6e-32 143.7 219 36.5
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 8.1e-32 141.4 213 38.5
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 8.1e-32 141.4 213 38.5
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.8e-31 140.2 214 38.3
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.1e-31 139.4 163 45.4
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 5.2e-31 138.7 214 39.7
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.4e-30 135.6 219 36.5
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 9.9e-30 134.4 210 38.1
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-29 133.7 208 38.9
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.9e-29 132.9 145 46.9
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 8.4e-29 131.3 182 42.9
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.4e-28 130.6 213 37.6
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 4.2e-28 129.0 208 39.9
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-28 129.0 161 44.1
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 7.1e-28 128.3 217 39.2
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.7e-27 126.3 198 37.9
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 6.0e-27 125.2 214 36.0
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.8e-27 124.8 218 35.3
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.3e-26 124.0 198 37.4
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 3.9e-26 122.5 215 37.2
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 5.1e-26 122.1 232 34.9
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-25 119.8 216 32.9
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.6e-25 118.6 198 36.4
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.6e-25 117.9 211 33.6
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.6e-25 117.9 144 45.1
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 2.1e-24 116.7 197 33.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 3.6e-24 115.9 212 33.0
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 3.6e-24 115.9 212 33.0
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.4e-23 113.2 212 32.5
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-23 112.8 127 46.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 6.9e-23 111.7 164 40.9
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 6.9e-23 111.7 164 40.9
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-22 110.9 179 36.9
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-22 110.5 197 34.0
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-22 110.2 179 36.3
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-22 110.2 217 32.7
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 4.4e-22 109.0 191 34.0
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.3e-21 107.5 178 36.0
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 2.9e-21 106.3 176 35.8
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.9e-21 106.3 218 33.5
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.8e-21 105.9 242 30.6
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.9e-21 105.5 127 46.5
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.4e-20 104.0 195 33.3
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-20 104.0 173 37.0
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-20 104.0 127 45.7
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.4e-20 104.0 169 37.3
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-20 103.6 183 36.6
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.2e-20 102.4 147 38.1
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.2e-20 102.4 208 32.2
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 4.2e-20 102.4 217 33.2
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 4.2e-20 102.4 127 44.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.4e-20 102.1 161 36.6
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.1e-20 101.7 114 47.4
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 7.1e-20 101.7 178 36.0
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 9.3e-20 101.3 144 38.2
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 9.3e-20 101.3 144 38.2
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 9.3e-20 101.3 215 32.1
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.6e-19 100.5 126 42.1
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.6e-19 100.5 126 42.1
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.5e-19 99.4 150 35.3
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.5e-19 99.4 179 34.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.5e-19 99.4 179 34.1
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 6.0e-19 98.6 126 42.1
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 6.0e-19 98.6 126 42.1
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 6.0e-19 98.6 178 36.5
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.3e-18 97.4 201 33.3
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.3e-18 97.4 201 33.3
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.7e-18 97.1 218 31.2
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.9e-17 93.6 197 37.6
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 2.5e-17 93.2 173 34.1
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.3e-17 92.8 187 35.3
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.1e-16 90.1 195 33.8
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-16 90.1 144 32.6
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 2.1e-16 90.1 179 29.6
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-16 89.7 212 29.7
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 4.8e-16 89.0 213 28.6
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.1e-15 87.8 150 38.0
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.4e-15 87.4 220 32.3
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 6.9e-15 85.1 207 32.9
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 1.5e-14 84.0 196 28.1
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 2.6e-14 83.2 198 31.8
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-14 82.0 124 38.7
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 4.9e-13 79.0 189 32.8
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.9e-13 79.0 96 42.7
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 6.4e-13 78.6 178 30.9
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 6.4e-13 78.6 178 30.9
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.1e-12 77.8 100 41.0
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.4e-12 75.5 102 42.2
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 5.4e-12 75.5 219 28.8
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 5.4e-12 75.5 199 31.2
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 9.3e-12 74.7 180 31.1
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 9.3e-12 74.7 199 31.2
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.6e-11 73.9 180 31.1
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-11 73.6 217 27.2
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.7e-11 73.2 100 38.0
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-11 73.2 81 53.1
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.6e-11 72.4 217 28.1
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.6e-11 72.4 198 28.8
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-10 70.9 114 35.1
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-10 70.9 197 29.9
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-10 70.5 171 32.2
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-10 70.1 92 42.4
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 2.3e-10 70.1 152 32.9
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.1e-10 68.9 157 31.8
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.1e-10 68.9 213 26.8
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 5.1e-10 68.9 114 35.1
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 2.1e-08 63.5 189 28.0
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 1.1e-07 61.2 172 27.9
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 3.1e-07 59.7 62 45.2
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.6e-06 56.6 44 59.1
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 9.9e-06 54.7 206 26.2


User provided reference genes

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