Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 4.9e-130 468.0 270 100.0
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 5.0e-82 308.5 196 79.1
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.2e-80 303.9 197 73.6
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.8e-79 300.1 192 75.5
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.5e-78 297.0 188 78.2
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 4.3e-78 295.4 197 74.1
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 5.7e-78 295.0 189 77.2
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 9.7e-78 294.3 188 76.6
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 1.7e-77 293.5 192 76.6
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 1.7e-77 293.5 187 77.0
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 2.8e-77 292.7 188 73.9
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 2.8e-77 292.7 187 76.5
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 2.8e-77 292.7 196 73.0
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.8e-77 292.7 196 73.0
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 4.8e-77 292.0 199 71.9
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 6.3e-77 291.6 196 75.0
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.2e-77 291.2 195 73.8
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.1e-76 290.8 196 72.4
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.1e-76 290.8 189 74.1
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.1e-76 290.8 190 74.2
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 1.4e-76 290.4 182 75.3
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.8e-76 290.0 194 72.7
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.8e-76 290.0 196 71.4
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.4e-76 289.7 197 74.6
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 2.4e-76 289.7 190 73.7
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.4e-76 289.7 196 72.4
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.4e-76 289.7 189 74.6
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 2.4e-76 289.7 189 74.6
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 1.2e-75 287.3 189 74.6
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.0e-75 286.6 197 73.6
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 2.0e-75 286.6 188 73.9
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 2.6e-75 286.2 184 75.5
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 1.7e-74 283.5 183 73.8
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 1.7e-74 283.5 190 71.6
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 1.7e-74 283.5 183 73.8
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 1.7e-74 283.5 188 72.3
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.7e-74 283.5 188 75.0
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 2.2e-74 283.1 192 70.3
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 2.2e-74 283.1 194 74.7
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 2.2e-74 283.1 183 73.2
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 8.5e-74 281.2 189 73.0
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 1.1e-73 280.8 192 70.3
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 1.9e-73 280.0 187 72.2
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 1.9e-73 280.0 188 72.9
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 2.5e-73 279.6 186 72.6
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 2.5e-73 279.6 185 73.5
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 4.2e-73 278.9 189 72.0
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 4.2e-73 278.9 197 69.5
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 9.4e-73 277.7 189 73.0
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 1.2e-72 277.3 186 74.7
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 1.6e-72 276.9 197 71.1
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 3.6e-72 275.8 199 66.8
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 4.7e-72 275.4 198 68.7
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 6.1e-72 275.0 188 72.3
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 6.1e-72 275.0 192 67.7
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 1.0e-71 274.2 197 68.0
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 3.9e-71 272.3 197 65.5
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 6.7e-71 271.6 189 69.3
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 8.8e-71 271.2 187 72.2
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 2.6e-70 269.6 186 72.6
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 5.7e-70 268.5 192 68.2
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 5.7e-70 268.5 192 70.8
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 7.4e-70 268.1 192 68.8
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 7.4e-70 268.1 195 67.2
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 1.3e-69 267.3 198 66.2
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 1.7e-69 266.9 192 68.8
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 2.2e-69 266.5 188 70.2
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 2.2e-69 266.5 198 68.2
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 3.7e-69 265.8 192 68.2
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 3.7e-69 265.8 201 66.7
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 3.7e-69 265.8 201 66.7
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 3.7e-69 265.8 198 65.2
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 8.2e-69 264.6 192 67.7
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 4.1e-68 262.3 192 67.2
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 5.3e-68 261.9 203 64.5
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 5.3e-68 261.9 198 64.1
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 7.0e-68 261.5 203 61.6
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 2.0e-67 260.0 199 65.3
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 2.0e-67 260.0 199 65.3
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 2.2e-66 256.5 185 81.6
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 2.9e-66 256.1 192 66.1
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 3.8e-66 255.8 217 60.8
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 3.8e-66 255.8 195 62.1
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 8.5e-66 254.6 198 61.6
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 2.5e-65 253.1 202 64.4
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 3.2e-65 252.7 189 68.3
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 9.4e-65 251.1 179 70.9
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 9.4e-65 251.1 179 70.9
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 1.6e-64 250.4 198 62.1
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 2.7e-64 249.6 182 65.4
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.8e-60 236.9 165 68.5
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 1.7e-58 230.3 190 57.4
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 8.0e-56 221.5 189 58.7
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 5.2e-55 218.8 191 58.6
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 7.5e-54 214.9 138 72.5
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 1.8e-52 210.3 161 64.6
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 3.1e-52 209.5 184 60.3
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 3.5e-51 206.1 159 63.5
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 5.9e-51 205.3 141 64.5
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 1.5e-49 200.7 192 55.7
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 2.1e-48 196.8 136 72.1
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 3.0e-47 193.0 201 51.2
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 5.2e-47 192.2 137 70.1
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 5.7e-46 188.7 140 65.7
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.1e-44 184.5 187 52.4
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 7.7e-43 178.3 119 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 2.1e-40 170.2 164 53.7
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 6.8e-39 165.2 189 45.5
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 9.8e-38 161.4 181 44.8
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 3.3e-33 146.4 78 88.5
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 2.1e-32 143.7 81 84.0
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 5.4e-28 129.0 127 54.3
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.6e-26 121.7 77 79.2
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 6.4e-21 105.5 143 46.9
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 7.1e-20 102.1 152 42.1
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.6e-16 90.9 134 40.3
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.9e-13 80.1 50 74.0
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.1e-12 78.2 83 54.2
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 3.3e-09 66.6 50 72.0
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 9.6e-09 65.1 59 57.6
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 2.8e-08 63.5 47 59.6
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 5.8e-06 55.8 30 86.7
Ah.07g199910 Amaranthus hybridus HOM05D006103 ORTHO05D007468 7.6e-06 55.5 51 52.9
arahy.Tifrunner.gnm1.ann1.NKK7HF Arachis hypogaea HOM05D006103 ORTHO05D007468 7.6e-06 55.5 35 74.3


User provided reference genes

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