Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 5.9e-48 194.1 117 100.0
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 3.5e-32 141.7 79 84.8
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.9e-32 141.0 79 83.5
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 7.8e-32 140.6 79 82.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 7.8e-32 140.6 79 83.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 7.8e-32 140.6 79 84.8
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.0e-31 140.2 75 86.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.7e-31 139.4 79 83.5
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.7e-31 139.4 79 79.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.7e-31 139.4 80 81.2
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 2.3e-31 139.0 80 81.2
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.9e-31 138.7 79 82.3
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.9e-31 138.7 79 81.0
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.9e-31 138.7 79 81.0
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.9e-31 138.7 80 83.8
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.9e-31 138.7 79 82.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 5.0e-31 137.9 80 81.2
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 5.0e-31 137.9 79 81.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.0e-31 137.9 80 77.5
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 5.0e-31 137.9 79 82.3
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.0e-31 137.9 80 80.0
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 6.6e-31 137.5 80 80.0
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 6.6e-31 137.5 79 81.0
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 6.6e-31 137.5 79 82.3
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 8.6e-31 137.1 79 81.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.1e-30 136.7 80 80.0
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-30 136.7 79 81.0
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.1e-30 136.7 80 78.8
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.5e-30 136.3 79 82.3
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.5e-30 136.3 79 81.0
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.5e-30 136.3 79 81.0
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.5e-30 136.3 79 81.0
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.5e-30 136.3 79 81.0
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 1.9e-30 136.0 79 79.7
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.9e-30 136.0 80 81.2
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.5e-30 135.6 79 79.7
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.5e-30 135.6 79 81.0
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.3e-30 135.2 79 79.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.3e-30 135.2 79 79.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 3.3e-30 135.2 79 79.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.3e-30 135.2 79 81.0
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 3.3e-30 135.2 79 79.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.3e-30 135.2 80 78.8
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.3e-30 135.2 76 82.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 3.3e-30 135.2 74 83.8
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 4.3e-30 134.8 79 78.5
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 4.3e-30 134.8 79 78.5
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.3e-30 134.8 80 75.0
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 4.3e-30 134.8 79 79.7
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 5.6e-30 134.4 79 81.0
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 5.6e-30 134.4 79 79.7
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.6e-30 134.4 79 79.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.6e-30 134.4 79 79.7
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 7.3e-30 134.0 80 78.8
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 7.3e-30 134.0 80 78.8
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 7.3e-30 134.0 80 78.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 7.3e-30 134.0 79 81.0
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 7.3e-30 134.0 79 81.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 7.3e-30 134.0 79 81.0
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 7.3e-30 134.0 80 78.8
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.3e-30 134.0 79 79.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.3e-30 134.0 80 78.8
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 7.3e-30 134.0 80 76.2
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 9.5e-30 133.7 80 77.5
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 9.5e-30 133.7 80 77.5
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.5e-30 133.7 79 78.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 9.5e-30 133.7 79 79.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 9.5e-30 133.7 79 79.7
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.2e-29 133.3 76 82.9
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.2e-29 133.3 79 78.5
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.2e-29 133.3 79 78.5
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.2e-29 133.3 79 77.2
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.2e-29 133.3 79 78.5
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-29 132.9 80 78.8
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-29 132.9 80 78.8
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-29 132.9 80 78.8
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.6e-29 132.9 80 78.8
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-29 132.9 80 78.8
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-29 132.9 80 78.8
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.6e-29 132.9 80 78.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-29 132.9 79 78.5
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 1.6e-29 132.9 79 79.7
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.6e-29 132.9 79 79.7
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.1e-29 132.5 80 77.5
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.1e-29 132.5 79 78.5
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.1e-29 132.5 79 78.5
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.1e-29 132.5 79 77.2
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.1e-29 132.5 79 78.5
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.1e-29 132.5 79 78.5
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.1e-29 132.5 80 77.5
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 2.1e-29 132.5 79 75.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.8e-29 132.1 80 77.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 3.6e-29 131.7 79 78.5
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 3.6e-29 131.7 79 78.5
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.6e-29 131.7 80 77.5
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 4.7e-29 131.3 68 86.8
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 6.1e-29 131.0 79 78.5
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 6.1e-29 131.0 79 78.5
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 8.0e-29 130.6 79 78.5
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 8.0e-29 130.6 79 77.2
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 8.0e-29 130.6 79 77.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.0e-28 130.2 80 77.5
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.4e-28 129.8 79 77.2
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.4e-28 129.8 79 79.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.8e-28 129.4 80 77.5
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.8e-28 129.4 79 74.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 2.3e-28 129.0 79 75.9
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 4.0e-28 128.3 80 76.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 4.0e-28 128.3 80 77.5
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.2e-27 126.7 79 74.7
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.5e-27 126.3 80 77.5
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-27 125.9 76 77.6
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.0e-27 125.9 79 74.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.3e-26 123.2 79 74.7
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.3e-26 123.2 79 75.9
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.7e-26 122.9 79 72.2
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.7e-26 122.9 79 70.9
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.9e-26 122.1 79 74.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 4.9e-26 121.3 79 70.9
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.1e-25 120.2 79 69.6
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.4e-25 119.8 80 73.8
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.2e-25 118.6 75 74.7
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 4.1e-25 118.2 79 72.2
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 4.1e-25 118.2 79 64.6
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.2e-24 116.7 79 68.4
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 4.6e-24 114.8 79 69.6
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 7.8e-24 114.0 64 79.7
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.0e-23 113.6 79 67.1
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.0e-23 113.6 79 72.2
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.9e-23 111.7 66 74.2
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.5e-22 109.8 79 63.3
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-21 106.3 75 69.3
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 8.0e-21 104.0 75 62.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.4e-20 103.2 113 48.7
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.8e-20 102.8 75 66.7
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 7.5e-19 97.4 47 89.4
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 2.2e-18 95.9 77 64.9
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.9e-18 95.5 47 87.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.1e-17 93.6 47 85.1
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.1e-17 93.6 47 83.0
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 2.1e-16 89.4 72 62.5
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.7e-16 89.0 63 66.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.9e-15 85.1 43 88.4
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-14 83.6 47 70.2
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.4e-12 76.6 75 50.7
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 5.2e-12 74.7 57 54.4
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 1.7e-10 69.7 45 75.6
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 6.4e-10 67.8 79 46.8
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.4e-09 65.9 47 70.2
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 5.4e-09 64.7 77 42.9
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 2.7e-08 62.4 59 45.8
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 7.3e-06 54.3 50 46.0


User provided reference genes

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