Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0000060 Simmondsia chinensis HOM05D006633 ORTHO05D008259 1.6e-106 389.4 191 100.0
Sc11g0009420 Simmondsia chinensis HOM05D006633 ORTHO05D008259 1.5e-80 303.1 151 100.0
Thecc.09G197800 Theobroma cacao HOM05D006633 ORTHO05D008259 8.1e-79 297.4 182 77.5
Cpa.g.sc119.27 Carica papaya HOM05D006633 ORTHO05D008259 1.1e-78 297.0 182 77.5
COL.COLO4_35074 Corchorus olitorius HOM05D006633 ORTHO05D008259 1.1e-78 297.0 183 76.5
Potri.003G222900 Populus trichocarpa HOM05D006633 ORTHO05D008259 1.1e-78 297.0 183 77.0
Haze_22925 Corylus avellana HOM05D006633 ORTHO05D008259 4.0e-78 295.0 181 77.9
Lj2A793G3 Lonicera japonica HOM05D006633 ORTHO05D008259 4.0e-78 295.0 184 76.6
Sabra03G0165800 Salix brachista HOM05D006633 ORTHO05D008259 5.2e-78 294.7 183 76.5
GSVIVG01025500001 Vitis vinifera HOM05D006633 ORTHO05D008259 5.2e-78 294.7 182 76.9
Gohir.A08G014400 Gossypium hirsutum HOM05D006633 ORTHO05D008259 1.5e-77 293.1 183 76.0
Gohir.D08G024900 Gossypium hirsutum HOM05D006633 ORTHO05D008259 2.0e-77 292.7 183 76.0
Manes.17G052500 Manihot esculenta HOM05D006633 ORTHO05D008259 2.0e-77 292.7 183 74.9
QL01p010451 Quercus lobata HOM05D006633 ORTHO05D008259 2.0e-77 292.7 181 76.2
Ciclev10015880m.g Citrus clementina HOM05D006633 ORTHO05D008259 2.6e-77 292.4 183 76.5
DCAR_001964 Daucus carota HOM05D006633 ORTHO05D008259 7.6e-77 290.8 187 74.9
Gorai.004G020300 Gossypium raimondii HOM05D006633 ORTHO05D008259 7.6e-77 290.8 183 75.4
Duzib168G0472 Durio zibethinus HOM05D006633 ORTHO05D008259 9.9e-77 290.4 181 75.1
HanXRQChr14g0437151 Helianthus annuus HOM05D006633 ORTHO05D008259 1.3e-76 290.0 183 74.9
TAR633G1699 Trochodendron aralioides HOM05D006633 ORTHO05D008259 1.3e-76 290.0 183 75.4
Cc01_g00320 Coffea canephora HOM05D006633 ORTHO05D008259 1.7e-76 289.7 184 75.0
PGR102G1790 Punica granatum HOM05D006633 ORTHO05D008259 1.7e-76 289.7 180 76.1
Atru.chr3.2065 Acer truncatum HOM05D006633 ORTHO05D008259 2.9e-76 288.9 181 74.6
Oeu060898.1 Olea europaea HOM05D006633 ORTHO05D008259 6.4e-76 287.7 181 75.1
Actinidia00914 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.1e-75 287.0 180 76.1
THA.LOC104813477 Tarenaya hassleriana HOM05D006633 ORTHO05D008259 1.1e-75 287.0 181 74.6
CiPaw.13G178900 Carya illinoinensis HOM05D006633 ORTHO05D008259 1.4e-75 286.6 181 75.1
Eucgr.B03588 Eucalyptus grandis HOM05D006633 ORTHO05D008259 4.2e-75 285.0 183 74.9
TWI34G2025 Tripterygium wilfordii HOM05D006633 ORTHO05D008259 4.2e-75 285.0 179 76.5
ECA238G0103 Erigeron canadensis HOM05D006633 ORTHO05D008259 5.4e-75 284.6 182 74.2
CAN.G431.4 Capsicum annuum HOM05D006633 ORTHO05D008259 7.1e-75 284.3 180 76.1
Sopen01g017000 Solanum pennellii HOM05D006633 ORTHO05D008259 1.2e-74 283.5 180 75.0
PSO384G1804 Papaver somniferum HOM05D006633 ORTHO05D008259 1.6e-74 283.1 187 72.2
Nn7g35825 Nelumbo nucifera HOM05D006633 ORTHO05D008259 2.7e-74 282.3 185 72.4
Solyc01g028870.3 Solanum lycopersicum HOM05D006633 ORTHO05D008259 2.7e-74 282.3 180 74.4
CANSAT11G1927 Cannabis sativa HOM05D006633 ORTHO05D008259 3.5e-74 282.0 181 74.0
CARHR233930 Cardamine hirsuta HOM05D006633 ORTHO05D008259 3.5e-74 282.0 186 72.0
Actinidia16230 Actinidia chinensis HOM05D006633 ORTHO05D008259 6.0e-74 281.2 180 74.4
PSO339G0565 Papaver somniferum HOM05D006633 ORTHO05D008259 6.0e-74 281.2 187 71.7
MELO3C014730.2 Cucumis melo HOM05D006633 ORTHO05D008259 2.3e-73 279.3 185 69.7
AT4G26370 Arabidopsis thaliana HOM05D006633 ORTHO05D008259 5.1e-73 278.1 183 73.2
AL7G26590 Arabidopsis lyrata HOM05D006633 ORTHO05D008259 6.6e-73 277.7 183 72.7
Lsat_1_v5_gn_2_51040 Lactuca sativa HOM05D006633 ORTHO05D008259 6.6e-73 277.7 182 73.6
CsaV3_4G017570 Cucumis sativus L. HOM05D006633 ORTHO05D008259 1.5e-72 276.6 185 69.2
Thhalv10025833m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 2.5e-72 275.8 182 72.5
Nitab4.5_0008322g0010 Nicotiana tabacum HOM05D006633 ORTHO05D008259 2.5e-72 275.8 185 71.4
Aa31LG5G11730 Aethionema arabicum HOM05D006633 ORTHO05D008259 4.3e-72 275.0 186 69.9
SGA_v2.0_scaffold3G01722 Striga asiatica HOM05D000412 ORTHO05D000429 4.3e-72 275.0 178 73.6
Prupe.6G001800 Prunus persica HOM05D006633 ORTHO05D008259 5.6e-72 274.6 181 71.8
Carub.0007s1458 Capsella rubella HOM05D006633 ORTHO05D008259 7.3e-72 274.2 183 71.6
Ca_18789_v3 Cicer arietinum L. HOM05D006633 ORTHO05D008259 1.3e-71 273.5 182 70.9
BcaC06g32755 Brassica carinata HOM05D006633 ORTHO05D008259 1.6e-71 273.1 184 70.7
Sp7g24290 Schrenkiella parvula HOM05D006633 ORTHO05D008259 1.6e-71 273.1 182 71.4
Sed0023197 Sechium edule HOM05D006633 ORTHO05D008259 1.6e-71 273.1 179 70.9
BcaNung02426 Brassica carinata HOM05D006633 ORTHO05D008259 2.1e-71 272.7 182 72.0
Nitab4.5_0000075g0280 Nicotiana tabacum HOM05D006633 ORTHO05D008259 2.1e-71 272.7 185 70.8
Hund16643 Selenicereus undatus HOM05D006633 ORTHO05D008259 2.1e-71 272.7 189 70.4
BraA03t14735Z Brassica rapa HOM05D006633 ORTHO05D008259 2.8e-71 272.3 178 73.0
C01p22200 Brassica napus HOM05D006633 ORTHO05D008259 3.6e-71 271.9 176 73.9
BolC1t02150H Brassica oleracea HOM05D006633 ORTHO05D008259 3.6e-71 271.9 176 73.9
BraA01t01713Z Brassica rapa HOM05D006633 ORTHO05D008259 3.6e-71 271.9 176 73.9
C07p54850 Brassica napus HOM05D006633 ORTHO05D008259 6.2e-71 271.2 182 71.4
FAN16G0253 Fragaria x ananassa HOM05D006633 ORTHO05D008259 6.2e-71 271.2 185 69.2
FAN21G1569 Fragaria x ananassa HOM05D006633 ORTHO05D008259 8.1e-71 270.8 185 69.7
RcHm_v2.0_Chr5g0084001 Rosa chinensis HOM05D006633 ORTHO05D008259 1.1e-70 270.4 185 69.2
A01p17600 Brassica napus HOM05D006633 ORTHO05D008259 1.4e-70 270.0 176 73.3
A03p56650 Brassica napus HOM05D006633 ORTHO05D008259 2.4e-70 269.2 178 71.9
Rhsim13G0234200 Rhododendron simsii HOM05D006633 ORTHO05D008259 2.4e-70 269.2 179 73.2
Glyma.20G024400 Glycine max HOM05D006633 ORTHO05D008259 3.1e-70 268.9 179 71.5
Phvul.002G101000 Phaseolus vulgaris HOM05D006633 ORTHO05D008259 5.3e-70 268.1 179 71.5
SalBow2G0284 Salvia bowleyana HOM05D006633 ORTHO05D008259 5.3e-70 268.1 187 69.5
FAN11G3357 Fragaria x ananassa HOM05D006633 ORTHO05D008259 6.9e-70 267.7 185 69.2
Aqoxy2G00572 Aquilegia oxysepala HOM05D006633 ORTHO05D008259 1.5e-69 266.5 174 71.8
arahy.Tifrunner.gnm1.ann1.B7F07X Arachis hypogaea HOM05D006633 ORTHO05D008259 3.4e-69 265.4 179 70.4
MD11G1001800 Malus domestica HOM05D006633 ORTHO05D008259 5.8e-69 264.6 179 70.4
Glyma.07G224400 Glycine max HOM05D006633 ORTHO05D008259 7.6e-69 264.2 179 70.4
Lalb_Chr09g0328921 Lupinus albus HOM05D006633 ORTHO05D008259 7.6e-69 264.2 179 69.8
Migut.D02577 Erythranthe guttata HOM05D006633 ORTHO05D008259 1.7e-68 263.1 178 67.4
MSTRG.18887 Avicennia marina HOM05D006633 ORTHO05D008259 3.2e-67 258.8 178 69.1
TPR.G34055 Trifolium pratense HOM05D006633 ORTHO05D008259 3.2e-67 258.8 179 69.3
ATR0697G106 Amborella trichopoda HOM05D006633 ORTHO05D008259 1.6e-66 256.5 187 67.4
BcaC09g50693 Brassica carinata HOM05D006633 ORTHO05D008259 1.6e-66 256.5 182 68.7
AUR62011548 Chenopodium quinoa HOM05D006633 ORTHO05D008259 3.5e-66 255.4 178 70.8
Ah.01g020780 Amaranthus hybridus HOM05D006633 ORTHO05D008259 2.3e-65 252.7 178 69.1
BcaC06g32753 Brassica carinata HOM05D006633 ORTHO05D008259 2.3e-65 252.7 176 71.6
Psat7g133240 Pisum sativum HOM05D006633 ORTHO05D008259 2.3e-65 252.7 184 65.2
Lj4g0000825 Lotus japonicus HOM05D006633 ORTHO05D008259 1.9e-64 249.6 182 65.9
arahy.Tifrunner.gnm1.ann1.UCUG5X Arachis hypogaea HOM05D006633 ORTHO05D008259 9.6e-64 247.3 229 55.9
Peaxi162Scf00186g01010 Petunia axillaris HOM05D006633 ORTHO05D008259 1.3e-63 246.9 180 67.2
Os03g0656900 Oryza sativa ssp. japonica HOM05D006633 ORTHO05D008259 2.9e-60 235.7 178 62.4
HPP92_027714 Vanilla planifolia HOM05D006633 ORTHO05D008259 1.1e-59 233.8 178 62.4
Medtr4g083370 Medicago truncatula HOM05D006633 ORTHO05D008259 9.6e-56 220.7 151 70.2
VMungo0251G3366 Vigna mungo HOM05D006633 ORTHO05D008259 1.6e-55 219.9 150 70.7
unitig_22.g5858 Utricularia gibba HOM05D006633 ORTHO05D008259 7.6e-53 211.1 176 60.8
FAN25G3644 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.1e-51 207.2 225 49.8
Hma1.2p1_2123F.1_g314533 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 4.6e-50 201.8 140 70.7
Thhalv10026040m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 2.3e-41 172.9 118 69.5
FvH4_3g45910 Fragaria vesca HOM05D006633 ORTHO05D008259 3.3e-40 169.1 124 64.5
Zm00001eb052690 Zea mays HOM05D006633 ORTHO05D008259 2.4e-38 162.9 178 47.8
vmacro04274 Vaccinium macrocarpon HOM05D006633 ORTHO05D008259 5.3e-38 161.8 149 56.4
CSS0002459 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.7e-36 156.8 90 78.9
ClCG02G024430 Citrullus lanatus HOM05D006633 ORTHO05D008259 1.4e-33 147.1 96 71.9
SMO228G0116 Selaginella moellendorffii HOM05D006633 ORTHO05D008259 3.0e-33 146.0 177 42.9
Hund09324 Selenicereus undatus HOM05D006633 ORTHO05D008259 6.7e-33 144.8 81 80.2
Pp3c10_23950 Physcomitrium patens HOM05D006633 ORTHO05D008259 8.5e-28 127.9 176 39.8
Mapoly0006s0155 Marchantia polymorpha HOM05D006633 ORTHO05D008259 1.2e-21 107.5 179 34.1
EL10Ac9g21929 Beta vulgaris HOM05D006633 ORTHO05D008259 7.7e-21 104.8 68 69.1
CSS0031986 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 7.7e-21 104.8 69 68.1
Zm00001eb218200 Zea mays HOM05D006633 ORTHO05D008259 7.7e-21 104.8 91 53.8
AUR62016367 Chenopodium quinoa HOM05D006633 ORTHO05D008259 5.0e-20 102.1 69 68.1
HanXRQChr15g0489901 Helianthus annuus HOM05D006633 ORTHO05D008259 1.5e-19 100.5 77 63.6
CDE10G1061 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 4.7e-18 95.5 71 64.8
Hma1.2p1_1877F.1_g306330 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 1.0e-17 94.4 93 53.8
SEGI_24744 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 2.3e-17 93.2 59 69.5
COL.COLO4_37952 Corchorus olitorius HOM05D006633 ORTHO05D008259 1.7e-15 87.0 57 71.9
HanXRQChr11g0336181 Helianthus annuus HOM05D006633 ORTHO05D008259 2.8e-15 86.3 70 61.4
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 2.5e-11 73.2 55 61.8


User provided reference genes

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