Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 0.0e+00 1219.1 643 100.0
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 2.0e-307 1058.5 559 98.2
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 7.5e-44 183.0 616 31.5
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 5.4e-42 176.8 465 35.7
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 1.4e-37 162.2 710 28.9
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 3.4e-36 157.5 727 28.6
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 5.7e-36 156.8 369 37.1
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 3.7e-35 154.1 601 29.3
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.0e-32 146.0 697 28.0
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 5.0e-32 143.7 727 28.7
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 5.6e-31 140.2 723 26.8
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 9.8e-28 129.4 613 27.9
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.9e-26 125.2 700 28.0
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 4.6e-25 120.6 721 26.2
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 6.0e-25 120.2 697 28.1
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 6.0e-25 120.2 708 26.1
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 1.3e-24 119.0 714 27.5
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 3.9e-24 117.5 482 29.5
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 4.3e-23 114.0 695 27.5
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 1.6e-22 112.1 686 28.6
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 1.6e-22 112.1 693 26.7
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 1.6e-22 112.1 684 25.6
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 1.6e-22 112.1 545 28.6
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 2.3e-21 108.2 441 27.9
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 5.8e-20 103.6 672 26.2
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 2.2e-19 101.7 641 27.5
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 2.2e-19 101.7 694 25.5
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 6.4e-19 100.1 687 26.2
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 6.4e-19 100.1 463 26.3
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 6.4e-19 100.1 495 27.3
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 6.4e-19 100.1 599 27.9
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 8.3e-19 99.8 672 27.4
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 8.3e-19 99.8 678 26.4
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 1.1e-18 99.4 668 26.5
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.4e-18 99.0 695 26.3
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.9e-18 98.6 588 27.0
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 1.9e-18 98.6 778 24.6
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.4e-18 98.2 494 28.9
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 3.2e-18 97.8 561 27.5
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 7.1e-18 96.7 626 26.8
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 9.2e-18 96.3 652 25.8
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 1.2e-17 95.9 697 24.0
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.6e-17 95.5 588 26.7
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 2.1e-17 95.1 446 29.1
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 2.7e-17 94.7 514 28.0
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 3.5e-17 94.4 514 27.6
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 3.5e-17 94.4 579 25.4
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 4.6e-17 94.0 707 25.3
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.3e-16 92.4 497 26.6
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 3.9e-16 90.9 510 27.8
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 3.9e-16 90.9 470 25.7
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 5.1e-16 90.5 668 26.2
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 1.5e-15 89.0 703 24.3
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 1.9e-15 88.6 693 26.4
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 2.1e-14 85.1 691 25.8
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 4.7e-14 84.0 351 27.9
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 4.7e-14 84.0 334 28.4
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 6.2e-14 83.6 554 26.4
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-13 82.8 680 25.7
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.1e-13 82.8 492 24.4
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 1.4e-13 82.4 491 27.5
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 2.3e-13 81.6 582 25.8
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 4.0e-13 80.9 586 24.9
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 4.0e-13 80.9 653 25.0
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 8.9e-13 79.7 671 24.3
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 4.4e-12 77.4 494 26.3
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 5.8e-12 77.0 673 22.7
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 5.8e-12 77.0 701 24.3
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 7.6e-12 76.6 523 26.0
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 1.7e-11 75.5 551 27.6
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 3.8e-11 74.3 345 27.5
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 6.4e-11 73.6 409 28.6
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 6.4e-11 73.6 543 26.5
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 1.4e-10 72.4 600 24.7
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 5.4e-10 70.5 630 23.5
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 1.6e-09 68.9 230 30.4
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 3.5e-09 67.8 569 26.0
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 3.5e-09 67.8 239 31.8
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 4.6e-09 67.4 683 24.6
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 1.0e-08 66.2 462 25.3
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 1.3e-08 65.9 665 25.0
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.7e-08 65.5 189 35.4
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 2.3e-08 65.1 192 33.3
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 3.9e-08 64.3 221 33.0
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 6.6e-08 63.5 398 26.6
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 6.6e-08 63.5 667 24.6
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 8.6e-08 63.2 604 24.0
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 1.9e-07 62.0 400 27.8
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 5.6e-07 60.5 427 26.5
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 7.3e-07 60.1 605 24.3
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 7.3e-07 60.1 100 41.0
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 7.3e-07 60.1 716 23.2
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 9.6e-07 59.7 656 24.1
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 1.6e-06 58.9 434 25.6
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 2.1e-06 58.5 247 30.0
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 2.1e-06 58.5 165 32.1
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 8.1e-06 56.6 364 25.0


User provided reference genes

Program Settings