Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.1e-87 326.6 167 100.0
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.6e-78 296.2 166 90.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.8e-74 282.7 164 85.4
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.1e-74 282.0 164 85.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.5e-73 279.6 164 83.5
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.4e-73 278.5 166 83.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 5.8e-73 277.7 164 82.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.8e-73 277.7 158 86.1
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.8e-73 277.7 166 83.1
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.6e-73 277.3 166 83.1
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.9e-73 276.9 166 83.1
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.9e-73 276.9 166 83.1
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.3e-72 276.6 159 84.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.7e-72 276.2 166 81.9
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.2e-72 275.8 164 83.5
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.9e-72 275.4 164 82.9
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.8e-72 275.0 159 84.3
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 3.8e-72 275.0 159 85.5
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 3.8e-72 275.0 165 81.2
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 3.8e-72 275.0 165 81.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 4.9e-72 274.6 165 81.2
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.4e-72 273.9 164 82.3
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 8.4e-72 273.9 159 83.6
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.1e-71 273.5 159 83.6
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.1e-71 273.5 165 81.2
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.1e-71 273.5 163 84.7
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.1e-71 273.5 159 86.2
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.9e-71 272.7 159 83.0
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.4e-71 272.3 163 82.8
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.4e-71 272.3 159 83.6
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.4e-71 272.3 159 83.6
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.4e-71 272.3 160 84.4
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 3.2e-71 271.9 159 83.0
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 5.4e-71 271.2 159 83.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.4e-71 271.2 166 79.5
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.4e-71 271.2 158 84.2
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 7.1e-71 270.8 165 81.2
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 7.1e-71 270.8 166 80.1
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 9.3e-71 270.4 165 80.6
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 9.3e-71 270.4 155 84.5
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.2e-70 270.0 161 81.4
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.2e-70 270.0 159 81.8
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.2e-70 270.0 159 81.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.2e-70 270.0 160 83.8
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.2e-70 270.0 160 83.8
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.6e-70 269.6 159 83.0
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.6e-70 269.6 159 83.0
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.5e-70 268.5 164 79.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 4.6e-70 268.1 159 83.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 6.0e-70 267.7 164 81.1
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 6.0e-70 267.7 160 81.9
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 7.8e-70 267.3 165 79.4
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.0e-69 266.9 165 78.2
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.7e-69 266.2 164 79.3
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.3e-69 265.8 158 82.9
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 3.0e-69 265.4 159 82.4
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.0e-69 265.4 154 83.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.9e-69 265.0 159 80.5
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 5.1e-69 264.6 166 78.9
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 8.7e-69 263.8 158 79.7
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 8.7e-69 263.8 159 81.8
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.1e-68 263.5 156 82.1
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.1e-68 263.5 157 82.2
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.5e-68 263.1 187 72.7
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.5e-68 263.1 164 78.0
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.5e-68 263.1 165 79.4
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.5e-68 262.3 158 81.0
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.5e-68 262.3 159 81.8
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.5e-68 262.3 162 79.0
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 3.3e-68 261.9 157 80.3
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 4.3e-68 261.5 158 81.0
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.3e-68 261.5 158 81.0
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 4.3e-68 261.5 159 80.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.3e-68 261.5 160 78.1
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 7.3e-68 260.8 159 80.5
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 7.3e-68 260.8 159 81.1
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 9.6e-68 260.4 159 78.6
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-67 260.0 159 79.2
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.6e-67 259.6 166 77.1
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 6.2e-67 257.7 165 78.8
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 6.2e-67 257.7 166 76.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.1e-66 256.9 157 80.9
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.1e-66 256.9 157 80.9
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.1e-66 256.9 162 77.8
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.1e-66 256.9 145 86.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.4e-66 256.5 156 81.4
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.4e-66 255.8 159 77.4
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.4e-66 255.8 160 77.5
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.4e-66 255.8 160 78.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 4.0e-66 255.0 151 80.8
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.2e-65 253.4 157 79.0
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 3.4e-65 251.9 160 75.6
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 5.8e-65 251.1 151 81.5
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 5.8e-65 251.1 151 81.5
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.7e-64 249.6 145 84.1
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.7e-64 249.6 166 74.7
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.7e-64 249.6 145 84.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.7e-64 249.6 165 73.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.2e-64 249.2 171 73.7
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.9e-64 248.8 157 80.3
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.8e-64 248.4 146 84.2
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 8.4e-64 247.3 164 73.8
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.1e-63 244.2 175 70.3
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.7e-62 242.3 155 74.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.5e-62 241.9 142 82.4
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 4.6e-62 241.5 158 74.7
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.0e-61 240.4 137 85.4
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-61 239.6 160 73.8
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.9e-61 238.4 148 80.4
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 6.7e-61 237.7 139 81.3
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 6.7e-61 237.7 160 72.5
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.7e-61 237.3 163 75.5
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-60 236.9 159 73.6
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.3e-59 233.4 155 72.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.7e-59 231.9 137 83.9
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 9.3e-55 217.2 164 68.9
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 7.4e-52 207.6 135 78.5
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.8e-50 203.0 156 61.5
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.2e-48 196.1 123 74.8
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.2e-48 196.1 155 66.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 8.4e-48 194.1 155 57.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.2e-46 190.3 109 85.3
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.1e-46 189.5 117 77.8
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.7e-45 184.5 141 67.4
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.1e-44 183.7 109 79.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.9e-44 183.0 117 79.5
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.7e-43 178.7 113 79.6
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.0e-42 174.1 111 77.5
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 5.0e-40 168.3 152 54.6
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.6e-38 163.3 100 81.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.3e-35 153.7 111 68.5
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 2.9e-32 142.5 116 63.8
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-31 139.4 77 84.4
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.4e-29 133.7 119 60.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.9e-29 132.1 119 59.7
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.3e-27 127.1 93 68.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-26 124.0 68 83.8
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-26 124.0 77 74.0
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.1e-26 122.1 77 76.6
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.6e-25 119.4 154 47.4
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 7.7e-25 117.9 172 44.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.9e-23 113.2 64 85.9
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.6e-22 110.2 120 55.8
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.6e-22 109.0 69 76.8
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 8.2e-19 97.8 66 68.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-17 92.4 77 62.3
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.0e-16 90.9 52 80.8
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 3.8e-16 89.0 58 70.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 1.6e-14 83.6 58 65.5


User provided reference genes

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