Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 5.9e-192 674.1 357 100.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.4e-47 194.5 343 41.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 5.4e-44 182.6 346 39.6
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.6e-43 181.0 343 39.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.5e-43 179.9 343 39.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.0e-42 176.8 341 38.4
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 9.6e-41 171.8 347 39.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.1e-40 170.6 328 38.7
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.8e-39 167.5 346 40.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 9.0e-39 165.2 332 38.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 3.4e-38 163.3 349 39.8
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.5e-38 162.9 349 37.2
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 7.6e-38 162.2 360 38.3
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.3e-37 161.4 315 36.8
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.3e-37 161.4 315 36.8
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 8.4e-37 158.7 346 37.9
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.4e-36 157.9 349 37.8
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.4e-36 157.9 319 37.6
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.6e-35 152.9 358 34.4
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.0e-34 151.8 356 35.1
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.0e-34 150.2 330 36.1
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.0e-34 150.2 317 35.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.0e-34 150.2 350 35.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 6.7e-34 149.1 357 36.4
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.3e-33 146.7 358 34.9
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.3e-33 146.7 346 35.0
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.3e-33 146.7 336 36.9
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 5.6e-33 146.0 357 36.1
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.3e-32 144.8 369 32.8
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.1e-32 144.1 320 36.9
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.8e-32 143.7 324 35.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.8e-32 143.7 322 33.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.2e-32 142.5 320 36.6
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.8e-31 141.0 368 33.7
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-31 141.0 350 34.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.4e-31 140.6 341 35.2
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 4.0e-31 139.8 341 34.6
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.0e-31 139.8 363 34.4
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.5e-30 137.9 364 35.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.6e-30 137.1 364 37.1
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.6e-30 137.1 336 36.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.4e-30 136.7 337 34.4
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.4e-30 136.7 363 35.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 4.5e-30 136.3 345 34.5
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 7.6e-30 135.6 324 34.6
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 9.9e-30 135.2 335 34.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-29 134.8 312 36.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-29 134.8 355 34.4
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.7e-29 134.4 349 34.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.8e-29 133.3 339 32.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.8e-29 133.3 341 35.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.9e-29 132.9 358 34.4
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.4e-29 132.5 332 33.7
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 8.4e-29 132.1 367 35.1
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-28 131.7 334 35.9
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-28 131.0 339 32.4
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.9e-28 131.0 345 33.9
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-28 130.6 332 34.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.4e-28 130.6 352 35.2
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.2e-27 128.3 335 34.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 2.7e-27 127.1 366 32.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.6e-27 126.3 351 33.0
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-26 125.2 328 31.4
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.3e-26 124.8 348 30.2
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.0e-26 123.6 351 33.3
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.5e-25 121.3 331 35.6
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.9e-25 120.9 345 32.2
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.6e-25 119.4 351 31.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.6e-25 119.4 331 31.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.1e-24 117.5 350 32.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.7e-24 116.7 314 32.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 6.2e-24 115.9 344 31.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 8.2e-24 115.5 325 32.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 5.3e-23 112.8 109 57.8
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.9e-23 112.5 324 33.3
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.0e-22 110.9 345 29.9
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 7.6e-22 109.0 386 32.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-21 107.8 385 30.4
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.7e-21 107.8 361 31.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.2e-21 107.5 341 31.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-20 105.1 359 30.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.4e-20 104.8 132 49.2
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 5.5e-20 102.8 340 33.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.3e-20 102.1 377 28.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.7e-19 100.5 336 31.2
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.5e-19 100.1 328 31.1
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.0e-19 99.4 357 30.5
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-18 98.6 178 38.2
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-18 98.2 335 30.1
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.3e-18 97.4 340 31.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.0e-18 97.1 318 31.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 6.7e-18 95.9 90 51.1
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.7e-18 95.9 356 29.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.5e-17 94.7 348 29.3
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.9e-17 94.4 90 55.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.5e-17 94.0 176 39.8
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.7e-17 92.8 77 63.6
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.7e-17 92.8 77 63.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 7.4e-17 92.4 99 54.5
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.3e-16 91.7 186 38.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.2e-16 90.9 347 29.7
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-16 90.1 74 60.8
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 3.7e-16 90.1 74 60.8
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 4.8e-16 89.7 69 60.9
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.3e-16 89.4 65 58.5
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 6.3e-16 89.4 78 55.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 8.2e-16 89.0 220 35.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-15 88.6 107 51.4
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.1e-15 88.6 349 29.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-15 87.8 112 48.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-15 87.8 166 38.6
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-15 87.8 112 48.2
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-15 87.8 166 38.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.4e-15 87.4 103 47.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.4e-15 87.4 184 36.4
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.1e-15 87.0 69 59.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.3e-15 86.3 316 28.2
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.9e-15 85.9 110 43.6
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 9.0e-15 85.5 116 46.6
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 9.0e-15 85.5 194 38.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.5e-14 84.7 322 30.1
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.5e-14 84.7 187 35.8
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.5e-14 84.7 129 43.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-14 84.0 183 32.8
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.6e-14 84.0 131 43.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.6e-14 84.0 110 45.5
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.4e-14 83.6 153 44.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.4e-14 83.6 63 68.3
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.6e-14 82.4 107 45.8
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-13 82.0 109 48.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.0e-13 82.0 66 53.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.7e-13 81.3 200 35.5
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.7e-13 81.3 115 44.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.2e-13 80.9 260 31.9
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 6.5e-13 79.3 188 34.6
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.4e-12 78.2 173 35.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.4e-12 78.2 173 35.8
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 4.2e-12 76.6 105 41.9
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 5.5e-12 76.3 224 28.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.2e-12 75.9 184 34.8
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.3e-12 75.5 220 32.7
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-11 75.1 224 28.6
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.1e-11 74.3 357 26.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.6e-11 73.2 66 57.6
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.1e-11 72.8 143 38.5
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 6.1e-11 72.8 67 56.7
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-10 71.2 105 45.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-10 71.2 105 45.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.8e-10 71.2 105 45.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.3e-10 70.9 100 45.0
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.3e-10 70.9 164 37.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.0e-10 70.5 176 34.1
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.9e-10 70.1 112 42.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.1e-10 69.7 64 54.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.8e-08 63.9 151 32.5
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.8e-08 63.9 95 40.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.4e-07 61.6 128 32.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-06 58.5 164 36.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.0e-06 57.8 65 46.2
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.6e-06 57.4 62 45.2
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.6e-06 57.4 80 43.8
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 5.9e-06 56.2 81 37.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 7.7e-06 55.8 84 38.1


User provided reference genes

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