Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.1e-102 376.7 193 100.0
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.5e-67 259.2 200 66.0
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 5.5e-67 258.1 193 67.9
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.0e-65 252.3 199 64.3
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 4.1e-62 241.9 189 65.6
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 7.0e-62 241.1 189 63.0
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 2.0e-61 239.6 189 62.4
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 3.5e-61 238.8 193 63.7
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.0e-60 237.3 189 61.9
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 2.9e-60 235.7 189 65.1
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.9e-60 235.7 189 61.9
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 3.8e-60 235.3 189 65.1
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 3.8e-60 235.3 189 60.3
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 5.0e-60 235.0 191 62.3
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 6.5e-60 234.6 189 61.9
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 8.5e-60 234.2 189 60.3
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.5e-59 232.6 193 61.1
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.5e-59 232.6 193 61.1
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.2e-59 232.3 189 62.4
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 4.2e-59 231.9 189 60.3
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 4.2e-59 231.9 191 62.3
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 5.5e-59 231.5 187 61.5
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 5.5e-59 231.5 189 63.0
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 7.2e-59 231.1 187 61.0
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 7.2e-59 231.1 194 60.8
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 9.4e-59 230.7 189 61.4
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.2e-58 230.3 191 61.3
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.2e-58 230.3 193 61.7
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 2.1e-58 229.6 191 59.7
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 2.7e-58 229.2 191 60.2
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 3.6e-58 228.8 190 61.1
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 4.7e-58 228.4 191 60.2
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 6.1e-58 228.0 189 59.3
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 6.1e-58 228.0 193 61.7
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 8.0e-58 227.6 193 59.6
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.0e-57 227.3 191 60.2
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 1.0e-57 227.3 191 60.2
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 1.4e-57 226.9 187 61.0
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.4e-57 226.9 191 60.2
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.8e-57 226.5 193 60.1
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 2.3e-57 226.1 193 60.1
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 2.3e-57 226.1 193 60.1
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 2.3e-57 226.1 193 60.1
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 2.3e-57 226.1 191 59.2
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 3.0e-57 225.7 192 60.4
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.0e-57 225.7 191 60.2
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 3.9e-57 225.3 189 58.7
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 5.2e-57 224.9 192 58.3
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 5.2e-57 224.9 191 60.2
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 8.8e-57 224.2 189 59.8
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.1e-56 223.8 189 59.3
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.5e-56 223.4 191 60.2
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.6e-56 222.6 192 57.8
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 2.6e-56 222.6 189 57.7
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 2.6e-56 222.6 189 58.7
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.3e-56 222.2 187 59.9
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 3.3e-56 222.2 189 58.7
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 3.3e-56 222.2 190 61.1
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 4.4e-56 221.9 192 59.9
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 4.4e-56 221.9 193 57.5
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 5.7e-56 221.5 188 59.6
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 5.7e-56 221.5 189 57.1
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 7.4e-56 221.1 189 58.2
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.3e-55 220.3 187 59.4
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.7e-55 219.9 191 59.7
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.8e-55 219.2 194 57.7
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.8e-55 219.2 194 58.2
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 3.7e-55 218.8 190 60.0
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 3.7e-55 218.8 187 59.4
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.7e-55 218.8 185 60.0
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 4.8e-55 218.4 191 58.6
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 4.8e-55 218.4 192 56.8
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 8.2e-55 217.6 187 56.7
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.1e-54 217.2 187 56.7
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.4e-54 216.9 189 57.7
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.8e-54 216.5 189 56.1
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 2.4e-54 216.1 191 58.6
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 2.4e-54 216.1 189 57.7
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.1e-54 215.7 185 58.9
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 3.1e-54 215.7 185 58.4
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 3.1e-54 215.7 185 57.8
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 4.1e-54 215.3 173 61.8
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 5.3e-54 214.9 187 58.3
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 5.3e-54 214.9 183 58.5
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 5.3e-54 214.9 185 57.3
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 5.3e-54 214.9 185 57.3
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.2e-53 213.8 188 56.9
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 5.9e-53 211.5 183 57.4
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 1.3e-52 210.3 188 56.9
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 6.5e-52 208.0 185 55.7
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 1.1e-51 207.2 191 55.0
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.1e-51 207.2 189 55.6
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 9.4e-51 204.1 177 57.6
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 6.1e-50 201.4 192 54.2
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.8e-49 199.9 185 51.9
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 3.0e-49 199.1 183 54.6
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.0e-49 198.7 183 54.6
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 5.2e-49 198.4 179 55.9
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 5.2e-49 198.4 193 54.4
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 2.2e-47 193.0 187 51.3
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.7e-47 192.2 188 51.1
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 4.1e-46 188.7 189 51.3
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 7.5e-40 167.9 163 52.8
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 1.3e-39 167.2 162 52.5
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 2.4e-38 162.9 186 47.3
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.6e-37 160.2 151 55.6
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 6.6e-36 154.8 146 54.1
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 1.0e-33 147.5 104 64.4
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.0e-32 143.3 183 43.7
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 2.8e-31 139.4 190 40.0
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.8e-31 139.4 125 57.6
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 3.7e-31 139.0 181 42.5
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.0e-29 133.3 93 65.6
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.7e-29 132.9 179 41.3
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.7e-28 130.2 176 37.5
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.9e-28 129.4 191 41.4
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.6e-26 123.6 185 37.8
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 8.0e-26 121.3 116 53.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.1e-25 119.4 86 60.5
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.9e-22 110.2 191 37.2
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.6e-21 107.1 173 34.7
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 9.5e-19 97.8 74 63.5
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 4.0e-17 92.4 84 53.6
Mapoly0114s0002 Marchantia polymorpha HOM05D003111 ORTHO05D003502 4.9e-07 58.9 121 30.6
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 7.1e-06 55.1 169 29.0
Aa31sc488G30 Aethionema arabicum HOM05D000172 ORTHO05D000273 9.2e-06 54.7 168 30.4


User provided reference genes

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