Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.4e-81 306.2 156 100.0
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.4e-36 156.8 141 62.4
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 9.0e-36 154.1 119 67.2
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.0e-34 150.6 139 59.7
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 5.0e-34 148.3 142 57.0
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.1e-33 147.1 84 81.0
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.5e-33 146.0 141 55.3
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 3.2e-33 145.6 111 64.9
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 4.2e-33 145.2 141 55.3
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 4.2e-33 145.2 141 55.3
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 4.2e-33 145.2 85 74.1
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 9.4e-33 144.1 123 61.8
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 9.4e-33 144.1 88 75.0
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 1.2e-32 143.7 84 78.6
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 2.7e-32 142.5 231 42.4
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 4.6e-32 141.7 86 73.3
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 6.1e-32 141.4 162 54.9
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 6.1e-32 141.4 162 54.9
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.1e-30 137.1 162 51.9
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.5e-30 136.7 175 48.6
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 2.0e-30 136.3 138 55.8
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 2.0e-30 136.3 175 48.6
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 5.7e-30 134.8 132 53.8
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 5.7e-30 134.8 98 67.3
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 9.7e-30 134.0 161 50.9
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 1.3e-29 133.7 148 53.4
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 3.7e-29 132.1 160 51.9
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.7e-29 132.1 105 62.9
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 3.7e-29 132.1 97 66.0
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 8.2e-29 131.0 153 51.0
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 8.2e-29 131.0 157 49.7
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 8.2e-29 131.0 170 51.8
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 8.2e-29 131.0 170 52.4
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 8.2e-29 131.0 144 54.2
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 1.1e-28 130.6 105 61.0
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.1e-28 130.6 96 67.7
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 1.4e-28 130.2 169 51.5
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.8e-28 129.8 162 51.9
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 3.1e-28 129.0 151 51.0
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 4.1e-28 128.6 148 52.7
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 6.9e-28 127.9 153 52.3
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.2e-27 127.1 165 47.9
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 3.4e-27 125.6 97 61.9
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.4e-27 125.6 88 67.0
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.4e-27 125.6 132 54.5
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 4.5e-27 125.2 92 65.2
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 4.5e-27 125.2 97 60.8
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 5.9e-27 124.8 151 51.0
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 5.9e-27 124.8 97 60.8
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 5.9e-27 124.8 176 46.6
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 7.7e-27 124.4 172 48.8
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.3e-26 123.6 156 51.3
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 1.7e-26 123.2 96 63.5
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 1.7e-26 123.2 131 52.7
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 2.2e-26 122.9 130 53.8
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 2.9e-26 122.5 149 49.0
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 2.9e-26 122.5 87 66.7
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 2.9e-26 122.5 138 51.4
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 6.5e-26 121.3 156 45.5
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 8.5e-26 120.9 112 58.9
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 8.5e-26 120.9 144 47.9
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 1.1e-25 120.6 154 50.0
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.1e-25 120.6 97 58.8
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.9e-25 119.8 162 47.5
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 2.5e-25 119.4 149 48.3
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 3.2e-25 119.0 148 49.3
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 4.2e-25 118.6 142 47.2
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 7.2e-25 117.9 149 46.3
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 9.4e-25 117.5 121 50.4
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 9.4e-25 117.5 121 50.4
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 1.2e-24 117.1 103 54.4
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 1.6e-24 116.7 164 46.3
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 2.1e-24 116.3 103 53.4
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 4.7e-24 115.2 138 47.8
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 4.7e-24 115.2 164 47.0
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 4.7e-24 115.2 163 49.1
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 1.0e-23 114.0 138 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 2.3e-23 112.8 139 47.5
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 3.0e-23 112.5 145 46.9
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 3.0e-23 112.5 145 46.9
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 3.0e-23 112.5 145 46.9
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.3e-21 107.1 155 47.7
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 4.8e-21 105.1 150 46.7
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 2.4e-20 102.8 158 42.4
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 5.3e-20 101.7 157 47.1
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 7.0e-20 101.3 95 54.7
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.1e-17 94.0 84 51.2
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 2.5e-17 92.8 84 52.4
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 2.1e-16 89.7 47 74.5
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 5.2e-15 85.1 91 56.0
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 5.7e-14 81.6 137 48.9
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 8.2e-13 77.8 68 55.9
Cre03.g201050 Chlamydomonas reinhardtii HOM05D007375 ORTHO05D009293 3.8e-10 68.9 106 36.8
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 5.0e-10 68.6 111 40.5
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 1.1e-09 67.4 107 46.7
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 2.5e-09 66.2 44 72.7
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 5.5e-09 65.1 84 44.0
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 1.0e-07 60.8 31 77.4
MCO03G284 Micromonas commoda HOM05D007375 ORTHO05D009293 1.8e-07 60.1 75 38.7
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 3.0e-07 59.3 35 74.3
Glyma.14G019700 Glycine max HOM05D007375 ORTHO05D009293 1.5e-06 57.0 34 73.5


User provided reference genes

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