Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.0e-151 540.0 276 100.0
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.5e-147 526.2 276 97.8
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 4.6e-91 338.6 270 69.3
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 3.9e-90 335.5 266 69.2
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 3.3e-89 332.4 277 66.4
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.2e-88 330.5 261 67.4
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 3.6e-88 328.9 274 66.8
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.1e-87 327.4 239 72.4
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 6.8e-87 324.7 262 65.6
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.4e-86 322.4 254 67.7
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 9.9e-86 320.9 258 66.7
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 3.8e-85 318.9 269 65.1
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 7.1e-84 314.7 265 66.0
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 7.8e-83 311.2 271 63.8
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 3.0e-82 309.3 267 63.3
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 3.0e-82 309.3 266 63.5
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 2.8e-80 302.8 268 61.6
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 4.7e-80 302.0 242 67.8
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.1e-79 300.8 235 68.1
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.4e-79 300.4 276 64.1
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 3.1e-79 299.3 274 61.3
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 1.5e-78 297.0 270 62.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.0e-78 296.6 270 61.1
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.0e-78 296.6 237 67.1
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 9.9e-78 294.3 271 62.0
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.3e-77 293.9 239 64.9
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.7e-77 293.5 239 65.7
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.2e-77 293.1 239 64.9
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 4.9e-77 292.0 239 65.3
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 8.4e-77 291.2 268 60.1
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 8.4e-77 291.2 273 61.2
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 1.1e-76 290.8 271 60.1
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 1.4e-76 290.4 279 59.5
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 1.4e-76 290.4 279 59.9
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 1.9e-76 290.0 272 60.7
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 4.2e-76 288.9 266 60.2
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 5.4e-76 288.5 264 60.6
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 9.3e-76 287.7 269 59.1
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 1.2e-75 287.3 268 60.4
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 3.5e-75 285.8 269 58.7
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.0e-74 284.3 269 58.4
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.3e-74 283.9 267 60.7
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 5.1e-74 282.0 291 56.4
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 5.1e-74 282.0 269 58.4
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 6.6e-74 281.6 260 60.0
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.5e-73 280.4 244 63.1
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.5e-73 279.6 257 60.3
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 2.5e-73 279.6 268 60.8
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 8.1e-72 274.6 269 58.7
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 9.0e-71 271.2 266 57.9
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 9.0e-71 271.2 261 60.2
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 1.5e-70 270.4 261 60.2
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 2.0e-70 270.0 219 63.5
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 2.6e-70 269.6 278 57.2
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 7.6e-70 268.1 271 56.1
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 2.9e-69 266.2 221 66.1
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.4e-68 263.8 270 56.7
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 4.2e-68 262.3 242 61.2
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 4.2e-68 262.3 272 55.1
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 5.4e-68 261.9 270 57.4
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.6e-67 260.4 261 57.1
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 2.1e-67 260.0 220 67.3
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 4.6e-67 258.8 220 64.1
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.6e-67 258.8 261 59.8
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 7.9e-67 258.1 256 59.0
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 1.3e-66 257.3 270 55.2
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.5e-65 253.8 233 60.1
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 3.3e-65 252.7 270 54.4
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 1.3e-64 250.8 258 55.0
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.3e-64 250.8 272 53.7
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.3e-64 250.8 260 55.0
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 4.8e-64 248.8 266 56.8
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 1.1e-63 247.7 253 56.9
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.4e-63 247.3 260 56.9
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.4e-63 247.3 260 56.9
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.4e-63 247.3 257 56.4
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 5.3e-63 245.4 210 67.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 5.3e-63 245.4 227 59.9
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 1.2e-62 244.2 266 55.6
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 5.8e-62 241.9 247 57.5
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 9.3e-60 234.6 219 59.4
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.0e-58 231.1 274 53.3
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 8.7e-58 228.0 255 54.1
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 4.8e-56 222.2 168 69.0
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 1.4e-55 220.7 217 59.4
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.4e-55 219.9 211 64.5
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 6.9e-55 218.4 224 59.8
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 1.4e-52 210.7 227 54.6
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 4.6e-51 205.7 340 41.8
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 2.2e-48 196.8 267 49.4
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.2e-48 196.8 179 63.1
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 7.7e-46 188.3 233 49.4
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.0e-45 188.0 229 51.5
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.0e-45 188.0 229 51.5
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.3e-45 187.6 267 47.2
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.7e-45 187.2 264 47.7
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 2.9e-45 186.4 204 53.9
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 3.8e-45 186.0 278 45.7
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 3.8e-45 186.0 278 45.7
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 5.0e-45 185.7 264 47.7
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.4e-44 184.1 266 47.7
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 1.9e-44 183.7 244 48.8
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 4.2e-44 182.6 266 47.7
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 1.6e-43 180.6 239 48.5
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 3.6e-43 179.5 266 45.5
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 6.1e-43 178.7 243 46.9
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 6.1e-43 178.7 265 48.7
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.8e-42 177.2 240 44.6
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 1.1e-41 174.5 118 76.3
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 2.4e-39 166.8 154 58.4
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 2.4e-39 166.8 227 46.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 3.1e-39 166.4 148 58.8
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.2e-38 164.5 101 82.2
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 3.3e-33 146.4 178 50.0
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 5.3e-31 139.0 92 73.9
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 4.2e-28 129.4 109 60.6
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 5.5e-28 129.0 164 45.7
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 1.6e-27 127.5 161 46.6
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 8.2e-24 115.2 72 81.9
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.1e-23 114.8 73 78.1
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.1e-23 114.8 161 45.3
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 5.3e-23 112.5 127 53.5
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 4.5e-22 109.4 211 36.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 1.5e-20 104.4 213 39.0
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 3.2e-20 103.2 72 69.4
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 2.1e-19 100.5 213 36.2
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 1.5e-17 94.4 65 75.4
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.4e-15 87.8 63 69.8
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.2e-14 84.7 48 91.7
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-13 80.1 138 38.4
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 2.3e-10 70.5 146 37.0
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 4.0e-10 69.7 138 35.5


User provided reference genes

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