Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0006110 Simmondsia chinensis HOM05D001463 ORTHO05D001282 2.0e-47 192.6 135 100.0
BcaB08g36279 Brassica carinata HOM05D001463 ORTHO05D001282 2.4e-13 79.3 132 43.9
A10p16390 Brassica napus HOM05D001463 ORTHO05D001282 4.2e-13 78.6 129 45.0
BraA10t43726Z Brassica rapa HOM05D001463 ORTHO05D001282 4.2e-13 78.6 129 45.0
Thhalv10014998m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 5.5e-13 78.2 129 43.4
BcaC03g14033 Brassica carinata HOM05D001463 ORTHO05D001282 3.5e-12 75.5 133 43.6
BcaC04g19809 Brassica carinata HOM05D001463 ORTHO05D001282 3.5e-12 75.5 133 43.6
C02p12720 Brassica napus HOM05D001463 ORTHO05D001282 3.5e-12 75.5 133 43.6
BolC2t07370H Brassica oleracea HOM05D001463 ORTHO05D001282 3.5e-12 75.5 133 43.6
AL8G35630 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 4.6e-12 75.1 130 43.1
Sp6g20900 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.0e-11 73.9 129 42.6
C09p51470 Brassica napus HOM05D001463 ORTHO05D001282 3.9e-11 72.0 133 42.9
BolC9t58006H Brassica oleracea HOM05D001463 ORTHO05D001282 3.9e-11 72.0 133 42.9
Carub.0008s1987 Capsella rubella HOM05D001463 ORTHO05D001282 3.9e-11 72.0 129 42.6
AT5G59080 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 5.1e-11 71.6 130 41.5
BcaB05g22486 Brassica carinata HOM05D001463 ORTHO05D001282 5.1e-11 71.6 129 42.6
Aa31LG1G11770 Aethionema arabicum HOM05D001463 ORTHO05D001282 8.7e-11 70.9 133 39.8
BcaB01g04602 Brassica carinata HOM05D001463 ORTHO05D001282 1.1e-10 70.5 88 51.1
A03p11840 Brassica napus HOM05D001463 ORTHO05D001282 1.5e-10 70.1 129 42.6
BraA03t10495Z Brassica rapa HOM05D001463 ORTHO05D001282 1.5e-10 70.1 129 42.6
A02p07300 Brassica napus HOM05D001463 ORTHO05D001282 2.5e-10 69.3 133 42.9
BolC3t13837H Brassica oleracea HOM05D001463 ORTHO05D001282 2.5e-10 69.3 129 42.6
CANSAT54G2006 Cannabis sativa HOM05D001463 ORTHO05D001282 3.3e-10 68.9 157 36.3
CARHR285550 Cardamine hirsuta HOM05D001463 ORTHO05D001282 4.3e-10 68.6 129 41.1
TAR623G0111 Trochodendron aralioides HOM05D001463 ORTHO05D001282 9.6e-10 67.4 154 37.0
C03p13900 Brassica napus HOM05D001463 ORTHO05D001282 2.8e-09 65.9 129 41.9
BraA02t05810Z Brassica rapa HOM05D001463 ORTHO05D001282 2.8e-09 65.9 124 41.1
AUR62020062 Chenopodium quinoa HOM05D001463 ORTHO05D001282 2.8e-09 65.9 155 37.4
Gohir.D05G092800 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.8e-09 65.9 147 39.5
AT5G02020 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 3.7e-09 65.5 145 39.3
Duzib093G1451 Durio zibethinus HOM05D001463 ORTHO05D001282 3.7e-09 65.5 160 36.2
Eucgr.B02296 Eucalyptus grandis HOM05D001463 ORTHO05D001282 3.7e-09 65.5 151 35.1
EL10Ac7g16089 Beta vulgaris HOM05D001463 ORTHO05D001282 4.8e-09 65.1 133 41.4
PGSC0003DMG400002161 Solanum tuberosum HOM05D001463 ORTHO05D001282 6.2e-09 64.7 147 36.1
GSVIVG01024854001 Vitis vinifera HOM05D001463 ORTHO05D001282 6.2e-09 64.7 154 38.3
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 8.2e-09 64.3 155 39.4
Gohir.A05G092000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.1e-08 63.9 97 46.4
Duzib106G1514 Durio zibethinus HOM05D001463 ORTHO05D001282 1.4e-08 63.5 154 35.1
Gorai.009G095400 Gossypium raimondii HOM05D001463 ORTHO05D001282 1.4e-08 63.5 97 47.4
AT3G46880 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 1.8e-08 63.2 128 39.8
BcaB01g06206 Brassica carinata HOM05D001956 ORTHO05D002035 2.4e-08 62.8 104 44.2
CsaV3_4G025610 Cucumis sativus L. HOM05D001463 ORTHO05D001282 4.0e-08 62.0 155 35.5
Ciclev10029407m.g Citrus clementina HOM05D001463 ORTHO05D001282 5.3e-08 61.6 152 36.2
Thhalv10014930m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 5.3e-08 61.6 138 37.7
THA.LOC104810744 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 5.3e-08 61.6 128 36.7
CARHR211340 Cardamine hirsuta HOM05D001463 ORTHO05D001282 6.9e-08 61.2 140 37.1
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 6.9e-08 61.2 158 34.8
Dinv37114 Davidia involucrata HOM05D001463 ORTHO05D001282 6.9e-08 61.2 152 37.5
FAN21G1105 Fragaria x ananassa HOM05D001463 ORTHO05D001282 9.0e-08 60.8 152 34.9
Solyc05g052890.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 9.0e-08 60.8 152 40.1
Sopen05g031400 Solanum pennellii HOM05D001463 ORTHO05D001282 9.0e-08 60.8 152 40.1
THA.LOC104814892 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 9.0e-08 60.8 129 39.5
TWI31G0608 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 9.0e-08 60.8 156 37.8
Atru.chr3.4029 Acer truncatum HOM05D001463 ORTHO05D001282 1.2e-07 60.5 135 37.8
C09p74450 Brassica napus HOM05D001463 ORTHO05D001282 1.2e-07 60.5 104 42.3
Hma1.2p1_0671F.1_g200570 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 1.5e-07 60.1 155 35.5
Hund04907 Selenicereus undatus HOM05D001463 ORTHO05D001282 1.5e-07 60.1 150 35.3
BraA03t09436Z Brassica rapa HOM05D001463 ORTHO05D001282 2.0e-07 59.7 101 43.6
CiPaw.13G087300 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.0e-07 59.7 151 35.8
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 2.0e-07 59.7 149 35.6
RcHm_v2.0_Chr5g0066931 Rosa chinensis HOM05D001463 ORTHO05D001282 2.0e-07 59.7 155 36.1
THA.LOC104827030 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 2.0e-07 59.7 154 33.8
AL6G11220 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.6e-07 59.3 145 35.9
MSTRG.5625 Avicennia marina HOM05D001463 ORTHO05D001282 2.6e-07 59.3 152 32.2
BcaB01g00963 Brassica carinata HOM05D001463 ORTHO05D001282 2.6e-07 59.3 132 39.4
CiPaw.14G063800 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.6e-07 59.3 108 44.4
Solyc09g011470.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 2.6e-07 59.3 148 35.8
GSVIVG01034066001 Vitis vinifera HOM05D001463 ORTHO05D001282 2.6e-07 59.3 153 34.6
MSTRG.19051 Avicennia marina HOM05D001463 ORTHO05D001282 3.4e-07 58.9 152 29.6
FvH4_3g37190 Fragaria vesca HOM05D001463 ORTHO05D001282 3.4e-07 58.9 106 42.5
CsaV3_1G035720 Cucumis sativus L. HOM05D001463 ORTHO05D001282 4.5e-07 58.5 133 51.1
FAN25G3555 Fragaria x ananassa HOM05D001463 ORTHO05D001282 4.5e-07 58.5 117 40.2
Potri.009G038300 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.5e-07 58.5 154 37.0
SalBow4G3124 Salvia bowleyana HOM05D001463 ORTHO05D001282 4.5e-07 58.5 127 37.0
CSS0026922 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 7.6e-07 57.8 154 35.7
AUR62001723 Chenopodium quinoa HOM05D001463 ORTHO05D001282 7.6e-07 57.8 113 42.5
Dinv16275 Davidia involucrata HOM05D001463 ORTHO05D001282 7.6e-07 57.8 165 33.3
Psat0s558g0040 Pisum sativum HOM05D001463 ORTHO05D001282 7.6e-07 57.8 153 34.0
Thecc.05G028900 Theobroma cacao HOM05D001463 ORTHO05D001282 7.6e-07 57.8 154 36.4
TAR636G3077 Trochodendron aralioides HOM05D001463 ORTHO05D001282 7.6e-07 57.8 166 33.7
MSTRG.8288 Avicennia marina HOM05D001463 ORTHO05D001282 1.0e-06 57.4 148 35.8
BcaNung02754 Brassica carinata HOM05D001463 ORTHO05D001282 1.0e-06 57.4 148 45.9
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 1.0e-06 57.4 158 36.7
COL.COLO4_18603 Corchorus olitorius HOM05D001463 ORTHO05D001282 1.0e-06 57.4 159 35.2
Gorai.007G377300 Gossypium raimondii HOM05D001463 ORTHO05D001282 1.0e-06 57.4 156 34.6
MBI14_g02863_MAGBIO Magnolia biondii HOM05D001463 ORTHO05D001282 1.0e-06 57.4 165 35.8
Oeu013160.1 Olea europaea HOM05D001463 ORTHO05D001282 1.0e-06 57.4 154 33.8
Sed0002411 Sechium edule HOM05D001463 ORTHO05D001282 1.0e-06 57.4 85 51.8
A03p00460 Brassica napus HOM05D001463 ORTHO05D001282 1.3e-06 57.0 100 43.0
CSS0044115 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 1.3e-06 57.0 166 36.7
FAN16G2865 Fragaria x ananassa HOM05D001463 ORTHO05D001282 1.3e-06 57.0 109 41.3
Thecc.09G312500 Theobroma cacao HOM05D001463 ORTHO05D001282 1.3e-06 57.0 160 35.0
Cc06_g02060 Coffea canephora HOM05D001463 ORTHO05D001282 1.7e-06 56.6 153 34.0
PGSC0003DMG400027191 Solanum tuberosum HOM05D001463 ORTHO05D001282 1.7e-06 56.6 111 45.9
FAN11G0374 Fragaria x ananassa HOM05D001463 ORTHO05D001282 2.2e-06 56.2 106 41.5
Glyma.03G073400 Glycine max HOM05D001463 ORTHO05D001282 2.2e-06 56.2 158 35.4
Gohir.A07G101300 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.2e-06 56.2 162 32.7
Gohir.A09G160900 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.2e-06 56.2 151 34.4
Prupe.6G067400 Prunus persica HOM05D001463 ORTHO05D001282 2.2e-06 56.2 154 33.1
CSS0026065 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 2.9e-06 55.8 156 35.9
Ciclev10013013m.g Citrus clementina HOM05D001463 ORTHO05D001282 2.9e-06 55.8 163 33.7
Gohir.D09G156600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.9e-06 55.8 154 33.8
Lsat_1_v5_gn_2_117121 Lactuca sativa HOM05D001463 ORTHO05D001282 2.9e-06 55.8 159 34.6
Manes.09G098500 Manihot esculenta HOM05D001463 ORTHO05D001282 2.9e-06 55.8 151 33.8
Medtr5g081360 Medicago truncatula HOM05D001463 ORTHO05D001282 2.9e-06 55.8 151 34.4
Sp6g40420 Schrenkiella parvula HOM05D001463 ORTHO05D001282 2.9e-06 55.8 100 42.0
C03p00740 Brassica napus HOM05D001463 ORTHO05D001282 3.8e-06 55.5 103 43.7
BolC3t12637H Brassica oleracea HOM05D001463 ORTHO05D001282 3.8e-06 55.5 103 43.7
Cfa011585 Carpinus fangiana HOM05D001463 ORTHO05D001282 3.8e-06 55.5 160 34.4
Cfa017303 Carpinus fangiana HOM05D001463 ORTHO05D001282 3.8e-06 55.5 157 35.0
Gorai.006G178100 Gossypium raimondii HOM05D001463 ORTHO05D001282 3.8e-06 55.5 151 33.8
MD03G1083100 Malus domestica HOM05D001463 ORTHO05D001282 3.8e-06 55.5 165 34.5
HanXRQChr07g0202061 Helianthus annuus HOM05D001463 ORTHO05D001282 4.9e-06 55.1 150 34.0
HanXRQChr07g0202081 Helianthus annuus HOM05D001463 ORTHO05D001282 4.9e-06 55.1 153 34.0
HanXRQChr09g0246971 Helianthus annuus HOM05D001463 ORTHO05D001282 4.9e-06 55.1 136 36.8
Medtr7g065150 Medicago truncatula HOM05D001463 ORTHO05D001282 6.5e-06 54.7 154 35.7
ClCG04G007570 Citrullus lanatus HOM05D001463 ORTHO05D001282 8.4e-06 54.3 155 34.2
Haze_24203 Corylus avellana HOM05D001463 ORTHO05D001282 8.4e-06 54.3 160 33.8
MELO3C020597.2 Cucumis melo HOM05D001463 ORTHO05D001282 8.4e-06 54.3 84 47.6
Gorai.001G113400 Gossypium raimondii HOM05D001463 ORTHO05D001282 8.4e-06 54.3 158 36.1
Peaxi162Scf00140g01313 Petunia axillaris HOM05D001463 ORTHO05D001282 8.4e-06 54.3 123 41.5
Prupe.6G264600 Prunus persica HOM05D001463 ORTHO05D001282 8.4e-06 54.3 159 34.6
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 8.4e-06 54.3 105 43.8
TWI77G0582 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 8.4e-06 54.3 154 32.5


User provided reference genes

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