Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 4.8e-157 557.8 276 100.0
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 5.4e-116 421.4 282 73.4
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 5.6e-113 411.4 279 71.0
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.3e-109 400.2 279 69.9
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 6.4e-109 397.9 280 69.6
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.1e-108 397.1 279 69.2
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.1e-108 397.1 283 69.6
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.4e-108 396.7 283 70.3
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 2.7e-107 392.5 280 69.6
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 4.6e-107 391.7 286 67.5
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.3e-106 390.2 243 77.8
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.5e-105 386.0 280 68.6
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 4.3e-105 385.2 283 68.6
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 7.3e-105 384.4 283 68.2
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.6e-104 383.3 283 68.2
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.1e-104 382.9 321 63.9
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.1e-104 382.9 283 68.2
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 4.7e-104 381.7 280 67.5
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.7e-104 381.7 308 64.6
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 8.0e-104 380.9 281 68.7
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 3.1e-103 379.0 280 68.2
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.1e-103 379.0 290 66.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.2e-102 377.1 283 67.5
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.0e-102 376.3 288 65.3
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.7e-101 373.2 281 68.0
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 8.3e-101 370.9 296 63.2
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 8.3e-101 370.9 238 72.7
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.1e-100 370.5 267 66.7
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 2.4e-100 369.4 272 67.3
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.4e-100 369.4 268 68.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 3.2e-100 369.0 288 62.2
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 7.0e-100 367.9 289 64.0
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.6e-99 366.7 250 68.8
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 2.0e-99 366.3 283 63.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.0e-99 366.3 317 60.3
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.6e-99 365.2 239 71.5
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 6.0e-99 364.8 257 69.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.3e-98 363.6 272 66.2
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.1e-97 360.5 318 60.1
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.5e-97 360.1 253 69.6
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.3e-97 359.0 272 66.9
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 2.8e-96 355.9 284 64.4
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.8e-96 355.9 282 62.8
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-95 354.0 258 66.7
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.8e-95 353.2 258 68.2
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.3e-95 352.8 258 66.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 3.1e-95 352.4 281 63.7
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 4.0e-95 352.1 282 63.8
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.0e-95 352.1 327 57.2
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 6.8e-95 351.3 288 63.9
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.2e-94 350.5 230 72.2
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.2e-94 350.5 297 63.3
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.2e-94 350.5 277 63.9
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 3.4e-94 349.0 248 67.3
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 4.4e-94 348.6 254 65.7
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 7.5e-94 347.8 287 62.4
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 7.5e-94 347.8 278 61.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.7e-93 346.7 287 62.7
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 2.2e-93 346.3 285 62.5
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 2.2e-93 346.3 285 62.5
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 2.2e-93 346.3 285 62.5
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 2.9e-93 345.9 218 75.7
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 3.7e-93 345.5 241 67.6
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 4.9e-93 345.1 248 66.5
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 6.4e-93 344.7 291 62.2
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.4e-93 344.7 276 62.0
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.1e-92 344.0 245 66.1
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.4e-92 343.6 284 62.3
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 1.4e-92 343.6 302 60.6
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.9e-92 343.2 242 67.8
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.2e-92 342.4 275 62.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 4.1e-92 342.0 284 62.0
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 4.1e-92 342.0 230 70.9
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 4.1e-92 342.0 279 59.1
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 5.4e-92 341.7 243 66.7
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.6e-91 340.1 251 68.1
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.6e-91 340.1 304 56.9
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 2.1e-91 339.7 212 75.9
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.7e-91 339.3 251 67.7
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 1.3e-90 337.0 229 69.4
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 6.6e-90 334.7 248 65.7
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.5e-89 333.6 229 69.0
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 3.6e-88 328.9 340 52.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.4e-87 327.0 267 64.0
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 5.2e-87 325.1 243 64.6
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 6.8e-87 324.7 243 63.4
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.5e-86 323.6 278 60.1
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 4.4e-86 322.0 283 59.4
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.9e-85 318.5 276 60.9
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 4.1e-84 315.5 270 60.4
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 4.1e-84 315.5 270 60.4
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 4.1e-84 315.5 270 60.4
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.7e-83 312.8 282 59.2
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.9e-81 306.6 232 65.5
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 4.3e-81 305.4 230 67.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.6e-80 302.4 226 70.8
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.6e-80 302.4 283 59.4
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.4e-79 299.7 279 57.7
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.4e-79 299.7 457 42.7
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 5.2e-79 298.5 303 53.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 9.0e-79 297.7 227 67.0
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 7.6e-78 294.7 239 59.8
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 3.8e-77 292.4 238 60.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 8.1e-72 274.6 278 52.2
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 2.4e-71 273.1 245 60.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 3.1e-71 272.7 199 67.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 5.6e-65 251.9 268 50.0
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 2.4e-63 246.5 212 57.1
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 1.9e-60 236.9 231 49.8
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 4.2e-60 235.7 184 62.0
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.0e-58 231.1 234 50.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.1e-56 223.4 156 69.9
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 3.7e-56 222.6 165 67.3
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 4.5e-54 215.7 232 47.8
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.6e-48 197.2 159 60.4
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.2e-43 181.0 142 60.6
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 5.1e-42 175.6 135 65.2
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 6.3e-40 168.7 127 68.5
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 5.3e-39 165.6 110 68.2
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 5.3e-39 165.6 149 57.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.6e-35 154.1 126 62.7
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.7e-35 153.3 100 72.0
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.5e-33 147.5 244 36.9
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 9.7e-33 144.8 78 82.1
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-31 141.4 75 86.7
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 3.5e-30 136.3 75 78.7
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 1.6e-27 127.5 115 59.1
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 3.9e-26 122.9 77 75.3
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 3.9e-26 122.9 77 75.3
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.9e-26 122.9 77 75.3
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.1e-23 114.8 67 79.1
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 7.7e-22 108.6 74 64.9
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 3.2e-20 103.2 132 43.9
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 6.7e-18 95.5 80 58.8
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 4.8e-16 89.4 89 57.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 4.1e-15 86.3 93 52.7
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 2.0e-14 84.0 42 88.1
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.7e-14 83.6 44 84.1
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-13 81.3 52 63.5
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.7e-13 80.9 72 58.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.5e-12 77.0 46 76.1
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 9.4e-12 75.1 73 52.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.8e-10 68.6 189 28.0
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 3.7e-08 63.2 37 78.4
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.4e-07 61.2 38 68.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 4.1e-07 59.7 196 25.0


User provided reference genes

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