Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.8e-204 716.1 729 100.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.1e-64 252.3 730 45.1
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 6.3e-55 219.9 715 41.1
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 4.2e-51 207.2 715 45.0
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.2e-50 205.7 715 42.4
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.4e-49 202.2 726 40.1
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.2e-47 194.9 727 41.7
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.2e-47 194.9 699 38.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 6.9e-46 189.9 662 31.3
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 9.1e-46 189.5 748 42.1
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.3e-44 185.7 717 28.5
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 5.0e-44 183.7 458 50.9
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.4e-43 182.2 669 42.6
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 3.2e-43 181.0 687 48.8
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 7.4e-40 169.9 743 41.7
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.2e-39 166.4 692 34.8
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 7.0e-38 163.3 785 42.9
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.7e-36 158.7 710 29.3
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 2.2e-36 158.3 459 44.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.9e-35 155.2 697 50.1
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.5e-35 153.7 393 45.8
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 7.2e-35 153.3 638 38.9
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.2e-35 153.3 673 48.6
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 9.4e-35 152.9 727 31.8
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 6.1e-34 150.2 457 39.6
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 5.2e-33 147.1 705 49.1
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.6e-32 144.8 461 38.0
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 9.7e-32 142.9 730 40.8
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 2.2e-31 141.7 206 49.5
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.8e-31 141.4 681 33.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.8e-31 140.6 736 40.4
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.2e-31 139.8 461 38.0
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.1e-30 139.4 471 45.6
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.1e-30 137.5 423 38.1
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 5.3e-30 137.1 399 35.3
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 7.0e-30 136.7 721 40.5
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 9.1e-30 136.3 492 47.4
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 2.0e-29 135.2 405 38.3
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.7e-29 134.8 632 48.9
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 4.5e-29 134.0 703 35.0
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 4.5e-29 134.0 677 35.0
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 5.9e-29 133.7 396 59.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.7e-28 132.1 201 41.3
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.7e-28 132.1 441 30.8
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.9e-28 131.3 407 36.1
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 3.8e-28 131.0 734 39.5
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.8e-28 131.0 730 37.9
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.0e-28 130.6 696 34.9
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.5e-27 129.0 408 50.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.9e-27 128.6 456 49.3
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.9e-27 128.6 733 45.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 3.2e-27 127.9 702 41.7
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.2e-27 127.5 442 48.0
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 5.5e-27 127.1 424 40.3
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.6e-26 125.6 442 48.2
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.6e-26 125.6 466 29.2
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.1e-26 125.2 470 28.3
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.7e-26 124.0 197 41.1
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.7e-26 124.0 466 27.7
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.1e-26 123.6 196 40.8
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 6.1e-26 123.6 425 38.1
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.0e-25 122.9 684 24.3
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.0e-25 122.9 149 46.3
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.8e-25 122.1 435 34.7
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.3e-25 121.7 443 52.4
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 4.0e-25 120.9 455 32.1
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 6.8e-25 120.2 701 44.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 8.8e-25 119.8 443 45.8
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.2e-24 119.4 729 37.3
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 2.6e-24 118.2 459 34.2
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.3e-23 115.9 382 37.4
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.7e-23 115.5 682 31.8
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.3e-23 113.2 172 41.3
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 5.4e-22 110.5 618 41.9
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.2e-21 109.4 188 36.7
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.6e-21 109.0 460 52.0
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.6e-21 109.0 660 47.0
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.0e-21 108.6 150 42.0
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.0e-21 108.6 677 40.8
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 2.7e-21 108.2 731 34.2
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.7e-21 108.2 171 42.1
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 4.5e-21 107.5 463 51.0
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 4.5e-21 107.5 205 37.1
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.0e-20 106.3 193 37.8
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.0e-20 106.3 654 43.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.7e-20 105.5 678 44.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.7e-20 105.5 687 44.1
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.7e-20 105.5 845 31.5
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 2.2e-20 105.1 431 39.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 3.8e-20 104.4 385 39.7
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 5.0e-20 104.0 452 33.0
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.5e-19 102.4 158 42.4
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 3.2e-19 101.3 466 51.1
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 5.5e-19 100.5 199 36.7
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 4.7e-18 97.4 734 34.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 8.0e-18 96.7 705 34.3
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 2.3e-17 95.1 429 34.3
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 4.0e-17 94.4 202 36.6
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 4.0e-17 94.4 140 42.1
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 4.0e-17 94.4 140 42.1
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 4.0e-17 94.4 140 42.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 5.2e-17 94.0 687 42.8
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.2e-17 94.0 577 32.8
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 6.8e-17 93.6 167 36.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 6.8e-17 93.6 658 36.9
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 8.8e-17 93.2 152 38.8
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 2.6e-16 91.7 142 35.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.6e-16 91.7 402 39.8
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 3.4e-16 91.3 160 37.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 4.4e-16 90.9 413 34.4
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 7.5e-16 90.1 132 43.9
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.2e-15 88.6 152 36.8
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 2.2e-15 88.6 374 30.7
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 2.8e-15 88.2 646 47.4
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.8e-15 88.2 92 59.8
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 3.7e-15 87.8 137 38.0
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 3.7e-15 87.8 345 40.3
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.1e-14 86.3 365 29.9
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 7.0e-14 83.6 84 56.0
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 9.2e-14 83.2 694 42.4
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 9.2e-14 83.2 694 42.4
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 1.0e-12 79.7 70 65.7
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 5.0e-12 77.4 689 45.7
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.1e-11 76.3 616 44.0
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.5e-11 75.1 89 53.9
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.5e-11 75.1 677 27.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.7e-10 70.9 88 42.0
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.0e-09 68.2 692 40.5
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 6.8e-09 67.0 126 58.7
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 6.8e-09 67.0 126 58.7
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.2e-08 66.2 692 21.1
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 1.2e-08 66.2 171 32.7
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.2e-08 66.2 86 41.9
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.6e-08 65.1 150 30.7
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 7.5e-08 63.5 97 39.2
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.3e-07 62.8 98 34.7
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.7e-07 62.4 613 20.1
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 2.9e-07 61.6 96 41.7
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 6.4e-07 60.5 70 45.7
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 6.4e-07 60.5 99 34.3
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 8.3e-07 60.1 137 43.1
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.1e-06 59.7 662 29.5


User provided reference genes

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