Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 8.8e-87 323.6 159 100.0
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 4.3e-33 145.2 106 65.1
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 7.3e-33 144.4 106 61.3
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 1.2e-32 143.7 106 61.3
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 4.7e-32 141.7 106 65.1
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 1.8e-31 139.8 106 64.2
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 2.3e-31 139.4 106 59.4
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 8.9e-31 137.5 111 60.4
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 2.0e-30 136.3 102 60.8
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 3.4e-30 135.6 106 61.3
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 7.6e-30 134.4 102 60.8
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 9.9e-30 134.0 102 59.8
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 9.9e-30 134.0 107 60.7
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 1.7e-29 133.3 106 59.4
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 2.9e-29 132.5 102 59.8
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 3.7e-29 132.1 106 58.5
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 8.4e-29 131.0 107 58.9
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 8.4e-29 131.0 107 58.9
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 1.4e-28 130.2 104 59.6
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 1.4e-28 130.2 106 58.5
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 1.9e-28 129.8 106 57.5
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 1.9e-28 129.8 106 57.5
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 2.4e-28 129.4 105 55.2
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 2.4e-28 129.4 124 51.6
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 2.4e-28 129.4 103 59.2
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 4.1e-28 128.6 95 63.2
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 4.1e-28 128.6 106 60.4
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 5.4e-28 128.3 105 52.4
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 5.4e-28 128.3 107 57.0
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 7.1e-28 127.9 106 59.4
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 9.2e-28 127.5 94 64.9
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 1.2e-27 127.1 102 56.9
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 1.6e-27 126.7 110 55.5
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 1.6e-27 126.7 106 53.8
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 2.1e-27 126.3 106 56.6
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 2.7e-27 125.9 105 54.3
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 4.6e-27 125.2 104 54.8
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 6.0e-27 124.8 106 55.7
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 6.0e-27 124.8 106 56.6
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 1.3e-26 123.6 104 55.8
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 2.3e-26 122.9 107 54.2
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 2.3e-26 122.9 106 55.7
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 3.0e-26 122.5 106 55.7
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 3.0e-26 122.5 106 54.7
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 3.0e-26 122.5 106 55.7
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 3.9e-26 122.1 106 53.8
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 3.9e-26 122.1 94 58.5
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 5.1e-26 121.7 106 53.8
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 5.1e-26 121.7 104 54.8
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 5.1e-26 121.7 94 60.6
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 5.1e-26 121.7 106 54.7
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 8.6e-26 120.9 111 54.1
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 1.1e-25 120.6 106 52.8
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 1.5e-25 120.2 106 53.8
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.5e-25 120.2 106 56.6
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.9e-25 119.8 104 55.8
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 1.9e-25 119.8 106 52.8
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 1.9e-25 119.8 106 54.7
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 7.3e-25 117.9 107 53.3
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 1.2e-24 117.1 106 50.9
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 1.6e-24 116.7 108 51.9
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 2.1e-24 116.3 104 51.9
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 2.1e-24 116.3 93 60.2
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 2.1e-24 116.3 101 50.5
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 2.8e-24 115.9 106 50.9
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 1.1e-23 114.0 108 55.6
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 1.1e-23 114.0 105 53.3
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 1.1e-23 114.0 112 48.2
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 1.8e-23 113.2 94 55.3
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 3.1e-23 112.5 107 47.7
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 5.2e-23 111.7 105 50.5
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 6.8e-23 111.3 95 56.8
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 1.2e-22 110.5 108 47.2
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 2.6e-22 109.4 106 50.9
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 7.6e-22 107.8 97 49.5
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 2.9e-21 105.9 94 53.2
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 3.8e-21 105.5 94 48.9
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 6.4e-21 104.8 97 49.5
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 2.4e-20 102.8 117 45.3
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 3.2e-20 102.4 106 48.1
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 4.2e-20 102.1 90 55.6
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 5.4e-20 101.7 94 48.9
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 5.4e-20 101.7 93 55.9
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 5.4e-20 101.7 101 49.5
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 5.4e-20 101.7 108 45.4
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 7.1e-20 101.3 94 47.9
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 1.2e-19 100.5 94 50.0
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 1.6e-19 100.1 101 48.5
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 3.5e-19 99.0 86 55.8
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 3.5e-19 99.0 102 47.1
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 3.5e-19 99.0 107 47.7
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 6.0e-19 98.2 106 45.3
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 1.3e-18 97.1 90 52.2
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 6.6e-18 94.7 102 46.1
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 2.8e-16 89.4 88 47.7
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 5.8e-14 81.6 76 50.0
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 1.4e-07 60.5 54 53.7
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 2.4e-07 59.7 55 50.9
Pp3c2_23860 Physcomitrium patens HOM05D007438 ORTHO05D009395 7.6e-06 54.7 84 38.1
Pp3c8_8490 Physcomitrium patens HOM05D000136 ORTHO05D000080 7.6e-06 54.7 100 32.0
Pp3c8_8860 Physcomitrium patens HOM05D000136 ORTHO05D000080 7.6e-06 54.7 100 32.0
Pp3c8_9230 Physcomitrium patens HOM05D000136 ORTHO05D000080 7.6e-06 54.7 100 32.0
Pp3c8_9380 Physcomitrium patens HOM05D000136 ORTHO05D000080 7.6e-06 54.7 100 32.0


User provided reference genes

Program Settings