Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.7e-169 598.6 304 100.0
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.6e-97 360.1 276 67.8
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 8.0e-97 357.8 279 67.0
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.5e-95 351.3 275 67.3
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.4e-93 346.3 274 66.8
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 3.2e-93 345.9 290 65.5
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 7.0e-93 344.7 277 66.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.6e-92 343.6 274 66.4
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 7.8e-92 341.3 275 65.5
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.1e-90 337.4 275 63.3
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.5e-90 336.3 274 62.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 4.3e-90 335.5 273 61.9
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 5.6e-90 335.1 274 64.6
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 2.8e-89 332.8 273 61.5
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.6e-89 332.4 234 68.4
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 4.7e-89 332.0 274 62.4
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 8.0e-89 331.3 273 61.5
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.4e-88 330.5 273 63.7
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.8e-88 330.1 233 70.8
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.3e-88 329.7 271 63.8
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 3.7e-86 322.4 264 62.9
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 4.9e-86 322.0 265 64.9
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 6.4e-86 321.6 264 62.9
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 8.3e-86 321.2 235 66.4
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.4e-85 319.7 287 59.9
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.4e-85 318.5 273 62.3
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 5.4e-85 318.5 257 63.8
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 5.4e-85 318.5 242 64.5
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 9.2e-85 317.8 274 60.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.2e-84 317.4 244 64.8
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 2.1e-84 316.6 281 59.8
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.1e-84 316.6 224 70.1
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.1e-84 316.6 225 69.3
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.7e-84 316.2 275 60.7
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 7.8e-84 314.7 255 63.9
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.0e-83 312.8 271 59.0
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 3.9e-83 312.4 276 59.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 5.1e-83 312.0 271 59.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 5.1e-83 312.0 232 66.8
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.5e-82 309.7 274 59.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.2e-81 307.4 262 61.8
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.1e-81 306.6 275 57.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.1e-81 306.6 261 60.5
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 4.0e-80 302.4 253 60.1
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 5.2e-80 302.0 233 65.2
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 8.9e-80 301.2 269 57.2
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 8.9e-80 301.2 234 62.8
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.2e-79 300.8 260 59.2
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-79 299.3 260 58.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 9.9e-79 297.7 247 61.1
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 9.9e-79 297.7 234 63.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 2.9e-78 296.2 242 64.0
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.1e-77 294.3 278 56.5
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.1e-77 294.3 223 63.2
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.4e-77 293.9 284 56.0
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.9e-77 293.5 236 63.6
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 5.4e-77 292.0 264 59.5
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 7.1e-77 291.6 276 56.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 7.8e-76 288.1 240 59.2
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.7e-75 287.0 231 60.6
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.3e-75 286.6 261 58.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.9e-75 285.8 273 55.3
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.1e-74 284.3 240 59.6
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 4.3e-74 282.3 240 58.3
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.6e-73 280.4 240 58.8
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.1e-73 280.0 269 54.3
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.8e-73 279.6 240 57.9
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 8.1e-73 278.1 283 54.8
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.1e-72 277.7 240 57.5
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.8e-72 276.9 274 52.6
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 3.1e-72 276.2 273 52.4
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 4.0e-72 275.8 240 57.5
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 4.0e-72 275.8 233 57.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.2e-72 275.4 275 54.5
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 5.2e-72 275.4 225 61.3
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 8.9e-72 274.6 254 56.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 8.9e-72 274.6 254 56.3
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.5e-71 273.9 236 56.8
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.4e-71 272.7 237 58.2
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.8e-71 271.9 225 60.0
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.6e-71 271.6 275 53.5
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.2e-70 270.0 206 64.1
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-69 266.9 232 58.2
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.4e-69 266.5 240 55.0
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 7.3e-66 255.0 198 64.1
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 6.2e-65 251.9 198 64.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 6.2e-65 251.9 266 50.0
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 8.1e-65 251.5 224 57.1
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.1e-64 249.6 186 67.7
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 9.0e-64 248.1 221 57.9
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 9.0e-64 248.1 222 60.8
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 7.6e-63 245.0 245 52.7
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 8.4e-62 241.5 230 54.8
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.4e-61 240.7 187 64.7
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 4.6e-60 235.7 247 50.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.0e-59 233.0 195 60.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.5e-58 230.7 219 55.7
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.5e-58 229.9 232 53.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.1e-57 224.9 186 60.2
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-55 219.5 181 60.8
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.4e-50 201.8 124 75.0
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.8e-47 192.2 160 61.2
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-45 186.4 221 49.8
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 2.3e-43 180.3 122 68.0
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-41 173.3 235 47.2
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.0e-38 164.9 273 35.9
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.9e-35 152.9 139 56.1
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.7e-35 152.1 159 51.6
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.0e-27 128.3 108 61.1
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.5e-26 124.4 124 54.8
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.7e-26 122.5 114 57.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.7e-26 121.7 140 50.7
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-24 116.7 246 36.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.1e-24 116.3 87 72.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.0e-23 114.0 111 52.3
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-20 102.4 103 51.5
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-20 102.4 71 69.0
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.9e-20 102.1 75 62.7
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.2e-17 94.0 82 52.4
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-14 85.1 94 48.9
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-14 84.3 137 42.3
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.2e-14 84.0 75 53.3
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-14 83.6 119 42.9
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 5.0e-14 82.8 142 38.0
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.1e-13 81.6 95 47.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.0e-11 75.1 93 43.0
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.0e-11 73.2 74 52.7
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.1e-10 71.6 200 28.0
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-10 70.5 88 44.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-09 68.2 66 47.0
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 2.2e-09 67.4 47 57.4
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 2.2e-09 67.4 47 57.4
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-08 64.7 135 30.4
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 2.4e-08 63.9 64 43.8
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 2.4e-08 63.9 64 43.8


User provided reference genes

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