Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003830 Simmondsia chinensis HOM05D000963 ORTHO05D013492 7.9e-165 583.6 267 100.0
arahy.Tifrunner.gnm1.ann1.F7VFKS Arachis hypogaea HOM05D000963 ORTHO05D010073 6.6e-79 298.1 260 61.2
arahy.Tifrunner.gnm1.ann1.LW54SX Arachis hypogaea HOM05D000963 ORTHO05D010073 4.8e-77 292.0 165 84.2
arahy.Tifrunner.gnm1.ann1.3JL12K Arachis hypogaea HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.6
arahy.Tifrunner.gnm1.ann1.9ZA4TL Arachis hypogaea HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.6
arahy.Tifrunner.gnm1.ann1.MCAP06 Arachis hypogaea HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.6
Lsat_1_v5_gn_0_47661 Lactuca sativa HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.0
Lsat_1_v5_gn_2_97101 Lactuca sativa HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.0
Lsat_1_v5_gn_6_94240 Lactuca sativa HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.0
Lsat_1_v5_gn_8_139860 Lactuca sativa HOM05D000963 ORTHO05D010073 8.1e-77 291.2 154 89.0
arahy.Tifrunner.gnm1.ann1.AKG7GD Arachis hypogaea HOM05D000963 ORTHO05D010073 4.3e-70 268.9 142 90.1
arahy.Tifrunner.gnm1.ann1.IG3D37 Arachis hypogaea HOM05D000963 ORTHO05D010073 4.3e-70 268.9 154 84.4
arahy.Tifrunner.gnm1.ann1.V5YKW3 Arachis hypogaea HOM05D000963 ORTHO05D010073 4.3e-70 268.9 142 90.1
DCAR_001521 Daucus carota HOM05D000963 ORTHO05D010073 1.5e-67 260.4 303 49.8
arahy.Tifrunner.gnm1.ann1.BP3EV9 Arachis hypogaea HOM05D000963 ORTHO05D010073 1.6e-64 250.4 137 86.1
Sopen10g016580 Solanum pennellii HOM05D000963 ORTHO05D010073 2.4e-60 236.5 141 82.3
Actinidia28233 Actinidia chinensis HOM05D000963 ORTHO05D010073 4.5e-59 232.3 170 66.5
Sed0001563 Sechium edule HOM05D000963 ORTHO05D010073 1.3e-58 230.7 154 74.0
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 1.3e-58 230.7 154 74.0
Sed0028031 Sechium edule HOM05D000963 ORTHO05D010073 1.3e-58 230.7 154 74.0
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 3.8e-58 229.2 154 73.4
FAN01G1778 Fragaria x ananassa HOM05D000963 ORTHO05D010073 7.4e-54 214.9 113 87.6
CDE02G3457 Ceratophyllum demersum HOM05D000963 ORTHO05D010073 2.1e-53 213.4 154 70.1
QL10p017078 Quercus lobata HOM05D000963 ORTHO05D010073 2.1e-53 213.4 154 70.1
FAN13G1378 Fragaria x ananassa HOM05D000963 ORTHO05D010073 2.8e-53 213.0 188 61.2
arahy.Tifrunner.gnm1.ann1.0FXL97 Arachis hypogaea HOM05D000963 ORTHO05D010073 6.3e-53 211.8 154 70.1
arahy.Tifrunner.gnm1.ann1.H38MEV Arachis hypogaea HOM05D000963 ORTHO05D010073 6.3e-53 211.8 154 70.1
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.2e-53 211.5 154 69.5
arahy.Tifrunner.gnm1.ann1.WPV0UJ Arachis hypogaea HOM05D000963 ORTHO05D010073 1.5e-51 207.2 154 68.8
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 2.3e-47 193.4 354 37.3
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 3.0e-47 193.0 93 92.5
arahy.Tifrunner.gnm1.ann1.L8KA6F Arachis hypogaea HOM05D000963 ORTHO05D010073 1.1e-46 191.0 104 82.7
Sopen05g013060 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-46 189.9 93 91.4
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 7.4e-46 188.3 92 92.4
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 7.4e-46 188.3 92 92.4
FAN20G2381 Fragaria x ananassa HOM05D000963 ORTHO05D010073 6.3e-45 185.3 95 88.4
Oeu029257.1 Olea europaea HOM05D000963 ORTHO05D010073 6.3e-45 185.3 126 72.2
FAN06G1734 Fragaria x ananassa HOM05D000963 ORTHO05D010073 6.5e-42 175.3 92 85.9
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.5e-38 163.3 154 57.8
Sc09g0006440 Simmondsia chinensis HOM05D000963 ORTHO05D010073 3.7e-37 159.5 77 92.2
Nn6g32818 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.7e-34 150.6 71 91.5
Nn029s41581 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.4e-33 147.5 68 94.1
Nn064s42218 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.4e-33 147.5 68 94.1
Nn1g08627 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.4e-33 147.5 68 94.1
Nn212s45206 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.4e-33 147.5 68 94.1
Nn304s46232 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.4e-33 147.5 68 94.1
Nn349s46478 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.4e-33 147.5 68 94.1
Nn5g26943 Nelumbo nucifera HOM05D012985 ORTHO05D013492 3.6e-32 142.9 71 88.7
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 6.7e-31 138.7 84 73.8
unitig_91.g26521 Utricularia gibba HOM05D000963 ORTHO05D010201 1.5e-30 137.5 117 62.4
ClCG04G002950 Citrullus lanatus HOM05D000963 ORTHO05D010073 2.6e-30 136.7 67 91.0
Nitab4.5_0007400g0110 Nicotiana tabacum HOM05D000963 ORTHO05D010073 2.6e-30 136.7 72 86.1
Psat3g011600 Pisum sativum HOM05D000963 ORTHO05D010073 7.4e-30 135.2 69 85.5
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 2.2e-29 133.7 72 81.9
SEGI_18787 Sequoiadendron giganteum HOM05D000963 ORTHO05D010073 2.2e-29 133.7 83 78.3
C09p39320 Brassica napus HOM05D012985 ORTHO05D013492 7.0e-28 128.6 72 83.3
Nn7g37900 Nelumbo nucifera HOM05D012985 ORTHO05D013492 1.6e-27 127.5 60 90.0
SEGI_39281 Sequoiadendron giganteum HOM05D000963 ORTHO05D010073 3.2e-25 119.8 119 58.8
Nn403s46568 Nelumbo nucifera HOM05D012985 ORTHO05D013492 4.2e-25 119.4 54 94.4
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 1.7e-21 107.5 154 44.2
Hma1.2p1_0431F.1_g151580 Hydrangea macrophylla HOM05D000963 ORTHO05D010073 1.5e-17 94.4 154 40.3
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 2.5e-17 93.6 124 47.6
Oeu010687.1 Olea europaea HOM05D000963 ORTHO05D010073 3.2e-17 93.2 59 69.5
Nitab4.5_0006727g0010 Nicotiana tabacum HOM05D000963 ORTHO05D010073 4.2e-17 92.8 51 78.4
Phvul.008G179700 Phaseolus vulgaris HOM05D000963 ORTHO05D010073 2.7e-16 90.1 43 93.0
arahy.Tifrunner.gnm1.ann1.W1SKJ5 Arachis hypogaea HOM05D000963 ORTHO05D013225 1.2e-14 84.7 40 97.5
Gohir.A04G039240 Gossypium hirsutum HOM05D000963 ORTHO05D010073 1.2e-14 84.7 40 97.5
Medtr4g451295 Medicago truncatula HOM05D000963 ORTHO05D010073 1.2e-14 84.7 40 97.5
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 1.2e-14 84.7 40 97.5
arahy.Tifrunner.gnm1.ann1.RD3GDK Arachis hypogaea HOM05D000963 ORTHO05D010073 1.5e-14 84.3 45 84.4
Gohir.1Z056500 Gossypium hirsutum HOM05D000963 ORTHO05D010073 3.4e-14 83.2 40 95.0
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 4.4e-14 82.8 39 97.4
CSS0020252 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D013225 5.7e-14 82.4 39 97.4
arahy.Tifrunner.gnm1.ann1.FXQ5AB Arachis hypogaea HOM05D000963 ORTHO05D010073 9.8e-14 81.6 76 59.2
TPR.G36687 Trifolium pratense HOM05D000963 ORTHO05D010073 3.7e-13 79.7 43 83.7
EL10Ac4g08799 Beta vulgaris HOM05D000963 ORTHO05D010073 8.3e-13 78.6 38 94.7
SEGI_06644 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.4e-12 77.8 133 45.9
SEGI_13999 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.4e-12 77.8 133 45.9
SEGI_16475 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.4e-12 77.8 133 45.9
SEGI_23954 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.4e-12 77.8 133 45.9
Gohir.A12G138580 Gossypium hirsutum HOM05D000963 ORTHO05D010073 1.8e-12 77.4 39 89.7
FAN08G1097 Fragaria x ananassa HOM05D009256 ORTHO05D011704 2.4e-12 77.0 97 48.5
Gorai.011G106300 Gossypium raimondii HOM05D000963 ORTHO05D010073 7.0e-12 75.5 40 85.0
VMungo1024G0003 Vigna mungo HOM05D009256 ORTHO05D011704 9.1e-12 75.1 102 48.0
arahy.Tifrunner.gnm1.ann1.Q2LPLX Arachis hypogaea HOM05D009256 ORTHO05D011704 1.2e-11 74.7 120 44.2
arahy.Tifrunner.gnm1.ann1.V5LEJ9 Arachis hypogaea HOM05D009256 ORTHO05D011704 1.2e-11 74.7 120 44.2
arahy.Tifrunner.gnm1.ann1.QZF0BL Arachis hypogaea HOM05D009256 ORTHO05D011704 2.7e-11 73.6 97 49.5
arahy.Tifrunner.gnm1.ann1.WH3GKX Arachis hypogaea HOM05D009256 ORTHO05D011704 2.7e-11 73.6 97 49.5
Gohir.D04G096660 Gossypium hirsutum HOM05D000963 ORTHO05D010073 2.7e-11 73.6 40 82.5
SEGI_38700 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 2.7e-11 73.6 122 45.1
TPR.G11370 Trifolium pratense HOM05D009256 ORTHO05D011704 2.7e-11 73.6 97 49.5
TAR629G1300 Trochodendron aralioides HOM05D009256 ORTHO05D011704 2.7e-11 73.6 97 49.5
Sopen11g020210 Solanum pennellii HOM05D000963 ORTHO05D013225 3.5e-11 73.2 37 94.6
BNapus_Darmor_BZH_scaffold_234p00110 Brassica napus HOM05D009256 ORTHO05D011704 5.9e-11 72.4 90 53.3
BraSC77t46657Z Brassica rapa HOM05D009256 ORTHO05D011704 5.9e-11 72.4 90 53.3
Gohir.1Z049892 Gossypium hirsutum HOM05D000963 ORTHO05D010073 2.2e-10 70.5 32 100.0
SGA_v2.0_scaffold222G42797 Striga asiatica HOM05D000963 ORTHO05D010073 2.2e-10 70.5 32 96.9
SEGI_01254 Sequoiadendron giganteum HOM05D000963 ORTHO05D010073 2.9e-10 70.1 40 80.0
Gorai.009G238500 Gossypium raimondii HOM05D000963 ORTHO05D010073 3.8e-10 69.7 40 80.0
Medtr4g091430 Medicago truncatula HOM05D009256 ORTHO05D011704 5.0e-10 69.3 97 47.4
Nitab4.5_0004841g0040 Nicotiana tabacum HOM05D014741 ORTHO05D011787 5.0e-10 69.3 37 81.1
Gorai.007G326100 Gossypium raimondii HOM05D000963 ORTHO05D010073 8.5e-10 68.6 38 86.8
SEGI_15462 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.5e-09 67.8 87 48.3
arahy.Tifrunner.gnm1.ann1.LL675T Arachis hypogaea HOM05D000963 ORTHO05D013492 1.9e-09 67.4 32 87.5
arahy.Tifrunner.gnm1.ann1.29GFI9 Arachis hypogaea HOM05D012985 ORTHO05D013492 2.5e-09 67.0 31 90.3
Oeu008622.1 Olea europaea HOM05D000866 ORTHO05D000673 1.4e-07 61.2 39 69.2
arahy.Tifrunner.gnm1.ann1.38JU3K Arachis hypogaea HOM05D012985 ORTHO05D023713 4.0e-07 59.7 33 75.8
Medtr4g006070 Medicago truncatula HOM05D000963 ORTHO05D010073 5.2e-07 59.3 70 51.4
Gorai.011G264900 Gossypium raimondii HOM05D000963 ORTHO05D010073 8.8e-07 58.5 29 86.2
TPR.G7250 Trifolium pratense HOM05D000963 ORTHO05D026921 9.8e-06 55.1 89 40.4


User provided reference genes

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