Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 7.1e-72 273.9 142 100.0
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 8.2e-36 154.1 119 68.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 3.5e-34 148.7 115 69.6
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 7.7e-34 147.5 124 64.5
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.2e-33 146.0 119 68.1
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 2.9e-33 145.6 119 69.7
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 5.0e-33 144.8 132 63.6
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 8.5e-33 144.1 119 65.5
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 1.9e-32 142.9 119 63.9
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 4.2e-32 141.7 120 65.8
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 4.2e-32 141.7 132 64.4
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 4.2e-32 141.7 122 64.8
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 9.4e-32 140.6 118 63.6
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 2.1e-31 139.4 121 65.3
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 2.1e-31 139.4 136 60.3
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 2.7e-31 139.0 120 63.3
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 8.0e-31 137.5 147 57.1
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 8.0e-31 137.5 122 63.1
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 1.0e-30 137.1 119 67.2
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.0e-30 137.1 114 65.8
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.0e-30 137.1 120 63.3
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 1.0e-30 137.1 121 63.6
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.8e-30 136.3 125 64.0
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 1.8e-30 136.3 119 66.4
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.0e-30 135.2 117 64.1
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 6.7e-30 134.4 118 63.6
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 6.7e-30 134.4 125 63.2
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 6.7e-30 134.4 139 57.6
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 8.8e-30 134.0 121 62.0
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.5e-29 133.3 125 63.2
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.5e-29 133.3 121 61.2
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.5e-29 133.3 118 60.2
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 2.0e-29 132.9 122 63.1
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.3e-29 132.1 130 58.5
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 4.4e-29 131.7 119 62.2
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 7.5e-29 131.0 119 62.2
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 7.5e-29 131.0 119 63.0
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 9.7e-29 130.6 124 60.5
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 1.3e-28 130.2 132 60.6
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.7e-28 129.8 127 60.6
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.7e-28 129.8 125 60.0
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.7e-28 129.8 122 62.3
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 3.7e-28 128.6 122 61.5
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 6.3e-28 127.9 118 63.6
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 8.2e-28 127.5 142 53.5
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 1.8e-27 126.3 122 58.2
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.8e-27 126.3 118 57.6
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 7.0e-27 124.4 127 55.9
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 1.2e-26 123.6 120 64.2
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.2e-26 123.6 125 56.0
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.6e-26 123.2 105 61.9
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 2.7e-26 122.5 120 58.3
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 3.5e-26 122.1 119 58.8
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.9e-26 121.3 118 58.5
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.0e-25 120.6 134 54.5
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.3e-25 120.2 134 53.0
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.7e-25 119.8 120 56.7
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 5.0e-25 118.2 119 56.3
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 5.0e-25 118.2 134 50.7
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 8.5e-25 117.5 116 58.6
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 1.9e-24 116.3 125 50.4
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 2.5e-24 115.9 126 57.1
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.5e-24 115.9 125 56.8
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 3.2e-24 115.5 122 56.6
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.2e-24 115.2 117 59.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 5.5e-24 114.8 115 55.7
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 2.7e-23 112.5 116 58.6
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 2.7e-23 112.5 122 55.7
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.6e-23 112.1 119 53.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 3.6e-23 112.1 121 55.4
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 1.0e-22 110.5 117 58.1
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.4e-22 110.2 135 52.6
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.4e-22 110.2 119 58.0
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.8e-22 109.8 119 52.9
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 2.3e-22 109.4 119 54.6
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 2.0e-21 106.3 105 57.1
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 3.4e-21 105.5 105 54.3
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 5.7e-21 104.8 123 54.5
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 7.5e-21 104.4 135 48.1
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 9.8e-21 104.0 121 51.2
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 3.7e-20 102.1 116 54.3
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 6.3e-20 101.3 117 51.3
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.1e-19 100.5 119 51.3
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 1.1e-19 100.5 121 49.6
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 1.4e-19 100.1 126 51.6
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 1.4e-19 100.1 126 51.6
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 1.4e-19 100.1 126 51.6
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.4e-19 100.1 117 51.3
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.4e-19 99.4 126 50.0
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 4.1e-19 98.6 77 66.2
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 4.1e-19 98.6 77 66.2
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 4.1e-19 98.6 57 86.0
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 7.0e-19 97.8 121 52.1
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 7.0e-19 97.8 121 52.1
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 4.5e-18 95.1 112 50.9
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 4.5e-18 95.1 121 52.9
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 7.7e-18 94.4 121 52.9
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.3e-17 93.6 167 41.3
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.7e-17 93.2 110 52.7
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.5e-16 89.4 132 47.0
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 2.1e-15 86.3 122 48.4
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 2.8e-15 85.9 116 48.3
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 2.8e-15 85.9 118 45.8
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 6.1e-15 84.7 118 47.5
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 6.1e-15 84.7 118 47.5
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 5.2e-14 81.6 82 57.3
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 8.9e-14 80.9 119 46.2
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 1.2e-13 80.5 113 46.0
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 7.5e-13 77.8 104 52.9
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 1.3e-12 77.0 111 45.0
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 2.4e-11 72.8 86 52.3
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 2.9e-09 65.9 53 73.6
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.1e-08 63.9 38 84.2
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 1.2e-07 60.5 55 49.1
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 8.0e-07 57.8 74 41.9
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.0e-06 57.4 32 84.4
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 1.8e-06 56.6 88 35.2
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 5.2e-06 55.1 83 47.0
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 5.2e-06 55.1 90 34.4
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.2e-06 55.1 58 44.8
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 8.9e-06 54.3 123 33.3
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 8.9e-06 54.3 74 39.2
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 8.9e-06 54.3 58 44.8


User provided reference genes

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