Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003540 Simmondsia chinensis HOM05D007167 ORTHO05D000922 0.0e+00 1197.2 557 100.0
Sc14g0003940 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.0e-52 212.2 606 31.7
Sc14g0003770 Simmondsia chinensis HOM05D007167 ORTHO05D001070 2.0e-29 134.8 96 69.8
Sc14g0003870 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.0e-29 134.8 96 69.8
Sc14g0004250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.0e-29 134.8 96 69.8
Sc14g0004350 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0000050 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.0e-29 134.8 96 69.8
ScUNg0000170 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.0e-29 134.8 96 69.8
ScUNg0000250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.0e-29 134.8 96 69.8
ScUNg0000310 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0000440 Simmondsia chinensis HOM05D013320 ORTHO05D000922 2.0e-29 134.8 96 69.8
ScUNg0000510 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.0e-29 134.8 96 69.8
ScUNg0000660 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0000690 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0000730 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0001100 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.0e-29 134.8 96 69.8
ScUNg0001240 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0001280 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0001330 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.0e-29 134.8 96 69.8
ScUNg0001370 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
ScUNg0001420 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-29 134.8 96 69.8
Sopen00g007010 Solanum pennellii HOM05D007167 ORTHO05D000922 2.6e-24 117.9 90 66.7
PGSC0003DMG400034963 Solanum tuberosum HOM05D007167 ORTHO05D000922 5.7e-24 116.7 90 66.7
PGSC0003DMG400039430 Solanum tuberosum HOM05D007167 ORTHO05D000922 5.7e-24 116.7 90 66.7
PGSC0003DMG400043107 Solanum tuberosum HOM05D007167 ORTHO05D000922 4.5e-21 107.1 95 58.9
Psat0s1917g0080 Pisum sativum HOM05D001828 ORTHO05D001745 6.5e-20 103.2 97 57.7
ScUNg0000950 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.4e-17 95.5 76 65.8
PGSC0003DMG400004552 Solanum tuberosum HOM05D007167 ORTHO05D000922 6.8e-17 93.2 90 53.3
EL10Ac5g11395 Beta vulgaris HOM05D007167 ORTHO05D000922 1.3e-15 89.0 65 63.1
A06p24760 Brassica napus HOM05D000920 ORTHO05D004854 2.2e-15 88.2 97 51.5
BNapus_Darmor_BZH_scaffold_107p00020 Brassica napus HOM05D000920 ORTHO05D004854 4.8e-15 87.0 118 47.5
BNapus_Darmor_BZH_scaffold_107p00050 Brassica napus HOM05D000920 ORTHO05D004854 4.8e-15 87.0 118 47.5
A09p31370 Brassica napus HOM05D000920 ORTHO05D004854 1.4e-14 85.5 69 59.4
A05p22350 Brassica napus HOM05D000920 ORTHO05D004854 3.1e-14 84.3 54 72.2
Sc14g0003330 Simmondsia chinensis HOM05D007167 ORTHO05D010128 7.0e-14 83.2 75 58.7
BNapus_Darmor_BZH_scaffold_107p00080 Brassica napus HOM05D007167 ORTHO05D000922 9.1e-14 82.8 74 59.5
BNapus_Darmor_BZH_scaffold_107p00200 Brassica napus HOM05D007167 ORTHO05D000922 1.2e-13 82.4 76 53.9
ScUNg0000910 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.5e-13 80.5 301 29.9
A05p22620 Brassica napus HOM05D000920 ORTHO05D004854 7.7e-13 79.7 67 59.7
A06p25100 Brassica napus HOM05D007167 ORTHO05D000922 1.0e-12 79.3 86 52.3
Sc06g0003810 Simmondsia chinensis HOM05D007167 ORTHO05D009885 1.0e-12 79.3 72 55.6
A06p25000 Brassica napus HOM05D000920 ORTHO05D004854 1.3e-12 79.0 61 62.3
A05p22260 Brassica napus HOM05D000920 ORTHO05D004854 2.3e-12 78.2 102 48.0
A05p22020 Brassica napus HOM05D000920 ORTHO05D004854 3.8e-12 77.4 97 45.4
Lj5g0000109 Lotus japonicus HOM05D000920 ORTHO05D000626 5.0e-12 77.0 55 69.1
LjContig00488g0002218 Lotus japonicus HOM05D000920 ORTHO05D000626 5.0e-12 77.0 55 69.1
ScUNg0000780 Simmondsia chinensis HOM05D007167 ORTHO05D013628 6.5e-12 76.6 67 59.7
Lj6g0023052 Lotus japonicus HOM05D005014 ORTHO05D003704 8.6e-12 76.3 48 70.8
Sc07g0005240 Simmondsia chinensis HOM05D007167 ORTHO05D000922 8.6e-12 76.3 66 60.6
Sc21g0003270 Simmondsia chinensis HOM05D000920 ORTHO05D004854 8.6e-12 76.3 63 58.7
ScUNg0000940 Simmondsia chinensis HOM05D007167 ORTHO05D013628 8.6e-12 76.3 68 57.4
Sc14g0003760 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.1e-11 75.9 217 36.4
Sopen07g009370 Solanum pennellii HOM05D000920 ORTHO05D000626 1.1e-11 75.9 55 65.5
Sopen00g001690 Solanum pennellii HOM05D000920 ORTHO05D000626 2.5e-11 74.7 45 77.8
Sc02g0009550 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-11 73.9 213 36.2
Sc14g0003700 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-11 73.9 213 36.2
Sc14g0004160 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-11 73.9 213 36.2
Sc14g0004320 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-11 73.9 213 36.2
Sc18g0006310 Simmondsia chinensis HOM05D007167 ORTHO05D001745 4.2e-11 73.9 213 36.2
ScUNg0000790 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-11 73.9 213 36.2
A06p24460 Brassica napus HOM05D000920 ORTHO05D004854 5.5e-11 73.6 98 46.9
Sc14g0004270 Simmondsia chinensis HOM05D007167 ORTHO05D000205 5.5e-11 73.6 214 33.2
ScUNg0001250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 5.5e-11 73.6 252 34.1
A06p26520 Brassica napus HOM05D007167 ORTHO05D000922 9.5e-11 72.8 70 58.6
A05p22480 Brassica napus HOM05D000920 ORTHO05D000626 1.2e-10 72.4 72 58.3
Cfa006170 Carpinus fangiana HOM05D007167 ORTHO05D009486 1.6e-10 72.0 47 68.1
A04p09260 Brassica napus HOM05D000920 ORTHO05D003704 2.1e-10 71.6 53 60.4
Sopen00g001800 Solanum pennellii HOM05D000920 ORTHO05D004854 2.1e-10 71.6 93 48.4
Zm00001eb263830 Zea mays HOM05D010106 ORTHO05D000626 4.7e-10 70.5 112 42.0
A06p24570 Brassica napus HOM05D000920 ORTHO05D004854 4.0e-09 67.4 71 52.1
Sc06g0003800 Simmondsia chinensis HOM05D001828 ORTHO05D009885 4.0e-09 67.4 41 73.2
EL10Ac4g08190 Beta vulgaris HOM05D007167 ORTHO05D000922 5.2e-09 67.0 49 69.4
EL10As19g24180 Beta vulgaris HOM05D000920 ORTHO05D004854 5.2e-09 67.0 43 79.1
Sopen00g002260 Solanum pennellii HOM05D000920 ORTHO05D004854 5.2e-09 67.0 44 72.7
A05p22730 Brassica napus HOM05D001319 ORTHO05D000922 6.8e-09 66.6 46 65.2
A05p22740 Brassica napus HOM05D001319 ORTHO05D000922 6.8e-09 66.6 46 65.2
Sc07g0005220 Simmondsia chinensis HOM05D001029 ORTHO05D000917 2.0e-08 65.1 85 40.0
Zm00001eb439260 Zea mays HOM05D010106 ORTHO05D000626 3.4e-08 64.3 76 46.1
unitig_675.g29244 Utricularia gibba HOM05D000920 ORTHO05D003704 4.4e-08 63.9 44 70.5
unitig_683.g34677 Utricularia gibba HOM05D000920 ORTHO05D000626 4.4e-08 63.9 44 70.5
unitig_791.g33060 Utricularia gibba HOM05D001018 ORTHO05D000626 4.4e-08 63.9 44 70.5
unitig_796.g33546 Utricularia gibba HOM05D000920 ORTHO05D000626 4.4e-08 63.9 44 70.5
A06p25010 Brassica napus HOM05D007167 ORTHO05D000922 7.5e-08 63.2 41 70.7
unitig_146.g30219 Utricularia gibba HOM05D000920 ORTHO05D000626 7.5e-08 63.2 95 44.2
Sc21g0003370 Simmondsia chinensis HOM05D003608 ORTHO05D000917 9.8e-08 62.8 50 62.0
Zm00001eb264000 Zea mays HOM05D000920 ORTHO05D004854 1.7e-07 62.0 46 63.0
A06p25480 Brassica napus HOM05D001319 ORTHO05D000922 2.2e-07 61.6 41 68.3
BNapus_Darmor_BZH_scaffold_107p00320 Brassica napus HOM05D000920 ORTHO05D004854 2.8e-07 61.2 86 47.7
Oeu043254.2 Olea europaea HOM05D000920 ORTHO05D022949 3.7e-07 60.8 50 60.0
Zm00001eb262430 Zea mays HOM05D001847 ORTHO05D004854 4.9e-07 60.5 52 57.7
CSS0039809 Camellia sinensis var. sinensis HOM05D012847 ORTHO05D004854 6.3e-07 60.1 42 69.0
CSS0041785 Camellia sinensis var. sinensis HOM05D012847 ORTHO05D024711 6.3e-07 60.1 42 69.0
Zm00001eb263800 Zea mays HOM05D010106 ORTHO05D000626 6.3e-07 60.1 57 54.4
A06p24170 Brassica napus HOM05D000920 ORTHO05D000626 8.3e-07 59.7 59 54.2
Zm00001eb262130 Zea mays HOM05D010106 ORTHO05D000626 1.1e-06 59.3 46 60.9
CSS0007537 Camellia sinensis var. sinensis HOM05D012847 ORTHO05D024711 1.4e-06 58.9 42 66.7
A09p31310 Brassica napus HOM05D000920 ORTHO05D004854 1.8e-06 58.5 54 55.6
BNapus_Darmor_BZH_scaffold_107p00380 Brassica napus HOM05D000920 ORTHO05D004854 2.4e-06 58.2 43 67.4
CSS0035511 Camellia sinensis var. sinensis HOM05D012847 ORTHO05D004854 2.4e-06 58.2 44 63.6
A05p22130 Brassica napus HOM05D000920 ORTHO05D004854 4.1e-06 57.4 43 69.8
Zm00001eb264050 Zea mays HOM05D000920 ORTHO05D004854 7.0e-06 56.6 103 38.8
SHI35535 Sapria himalayana HOM05D015261 ORTHO05D001679 9.2e-06 56.2 62 45.2
SHI35538 Sapria himalayana HOM05D015261 ORTHO05D001679 9.2e-06 56.2 62 45.2
SHI39806 Sapria himalayana HOM05D015261 ORTHO05D001679 9.2e-06 56.2 62 45.2
SHI39841 Sapria himalayana HOM05D015261 ORTHO05D001679 9.2e-06 56.2 62 45.2
SHI41312 Sapria himalayana HOM05D015261 ORTHO05D004854 9.2e-06 56.2 62 45.2
SHI41730 Sapria himalayana HOM05D015261 ORTHO05D004854 9.2e-06 56.2 62 45.2
SHI42217 Sapria himalayana HOM05D015261 ORTHO05D004854 9.2e-06 56.2 62 45.2


User provided reference genes

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