Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 4.8e-51 204.1 99 100.0
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.2e-46 189.5 99 92.9
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 5.2e-37 157.5 99 74.7
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 5.7e-36 154.1 99 71.7
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.3e-35 152.9 99 70.7
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 3.7e-35 151.4 99 71.7
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 2.4e-34 148.7 99 69.7
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 1.1e-31 139.8 98 66.3
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 1.5e-31 139.4 99 66.7
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.9e-31 139.0 98 67.3
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 3.3e-31 138.3 99 66.7
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 9.5e-31 136.7 99 65.7
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.6e-30 136.0 99 67.7
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.1e-30 135.6 99 67.7
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 2.1e-30 135.6 99 67.7
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.1e-30 135.6 99 66.7
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 3.6e-30 134.8 99 65.7
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 4.7e-30 134.4 98 63.3
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 4.7e-30 134.4 98 64.3
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 4.7e-30 134.4 98 63.3
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 6.1e-30 134.0 98 64.3
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 6.1e-30 134.0 98 64.3
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 6.1e-30 134.0 99 66.7
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 8.0e-30 133.7 99 64.6
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 1.4e-29 132.9 98 63.3
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.4e-29 132.9 99 68.7
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 1.8e-29 132.5 99 62.6
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 2.3e-29 132.1 98 62.2
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 2.3e-29 132.1 99 66.7
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 3.0e-29 131.7 98 62.2
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 3.0e-29 131.7 97 64.9
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 4.0e-29 131.3 99 63.6
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 4.0e-29 131.3 99 61.6
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 5.2e-29 131.0 99 63.6
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 6.8e-29 130.6 98 61.2
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 6.8e-29 130.6 98 61.2
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 8.9e-29 130.2 98 61.2
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 8.9e-29 130.2 99 65.7
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 8.9e-29 130.2 98 66.3
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 8.9e-29 130.2 98 66.3
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 8.9e-29 130.2 99 63.6
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 8.9e-29 130.2 98 61.2
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 1.2e-28 129.8 99 64.6
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.5e-28 129.4 99 61.6
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 1.5e-28 129.4 99 65.7
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 1.5e-28 129.4 99 66.7
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.0e-28 129.0 99 64.6
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 2.0e-28 129.0 99 64.6
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 2.0e-28 129.0 98 62.2
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.6e-28 128.6 98 65.3
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 3.4e-28 128.3 99 62.6
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 4.4e-28 127.9 99 59.6
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 4.4e-28 127.9 99 62.6
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 9.8e-28 126.7 99 58.6
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 9.8e-28 126.7 97 61.9
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.3e-27 126.3 99 61.6
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.2e-27 125.6 96 63.5
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 2.2e-27 125.6 99 62.6
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 2.9e-27 125.2 99 61.6
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 2.9e-27 125.2 99 61.6
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 3.7e-27 124.8 99 61.6
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 1.1e-26 123.2 99 61.6
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 1.4e-26 122.9 99 61.6
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 1.4e-26 122.9 98 61.2
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 1.4e-26 122.9 99 60.6
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.1e-26 121.3 99 62.6
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 4.1e-26 121.3 99 62.6
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 7.0e-26 120.6 99 60.6
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 9.2e-26 120.2 99 59.6
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 9.2e-26 120.2 99 59.6
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.2e-25 119.8 76 73.7
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.2e-25 119.8 99 58.6
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.2e-25 119.8 99 58.6
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 2.0e-25 119.0 88 64.8
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.0e-24 116.7 88 62.5
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 2.3e-24 115.5 99 58.6
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.3e-24 115.5 99 59.6
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 2.3e-24 115.5 99 61.6
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 3.0e-24 115.2 99 59.6
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.9e-24 114.8 97 58.8
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 5.0e-24 114.4 96 59.4
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 3.3e-23 111.7 99 53.5
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 3.3e-23 111.7 99 55.6
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 9.5e-23 110.2 99 57.6
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 1.8e-21 105.9 99 51.5
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 1.8e-21 105.9 99 52.5
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 6.8e-21 104.0 98 55.1
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 6.8e-21 104.0 76 64.5
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 6.8e-21 104.0 100 54.0
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 5.8e-20 100.9 99 50.5
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.7e-19 99.4 99 49.5
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 4.1e-18 94.7 98 51.0
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.0e-17 92.4 99 46.5
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 8.1e-14 80.5 87 49.4
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.1e-13 80.1 99 44.4
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 5.2e-13 77.8 72 54.2
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 3.5e-09 65.1 47 61.7
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 3.6e-06 55.1 44 59.1


User provided reference genes

Program Settings