Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 6.8e-95 350.9 212 100.0
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 5.1e-74 281.6 199 75.4
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 9.7e-33 144.4 191 46.1
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 1.7e-32 143.7 212 49.1
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 2.8e-32 142.9 223 39.9
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 3.7e-32 142.5 223 39.5
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 3.7e-32 142.5 219 42.0
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 4.8e-32 142.1 220 40.0
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 4.8e-32 142.1 185 47.6
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 2.4e-31 139.8 172 48.8
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 7.0e-31 138.3 172 44.8
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.6e-30 137.1 190 43.7
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 3.5e-30 136.0 183 45.4
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 3.5e-30 136.0 182 45.6
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.0e-29 134.4 213 39.0
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 1.0e-29 134.4 177 44.6
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.3e-29 134.0 172 48.3
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 2.2e-29 133.3 223 39.5
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 5.0e-29 132.1 190 42.1
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 6.5e-29 131.7 166 48.8
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 1.5e-28 130.6 183 43.7
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.5e-28 130.6 171 48.0
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.5e-28 130.6 217 39.6
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 2.5e-28 129.8 173 47.4
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 3.2e-28 129.4 171 46.2
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 3.2e-28 129.4 224 37.1
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 4.2e-28 129.0 180 45.6
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 4.2e-28 129.0 178 44.4
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 4.2e-28 129.0 230 38.3
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 5.5e-28 128.6 178 43.8
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 5.5e-28 128.6 177 43.5
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 5.5e-28 128.6 181 45.3
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 7.2e-28 128.3 171 45.6
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 1.2e-27 127.5 180 43.9
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.2e-27 127.5 193 40.9
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 1.6e-27 127.1 172 44.8
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.6e-27 127.1 178 44.9
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.7e-27 126.3 178 43.8
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.7e-27 126.3 178 43.3
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 4.7e-27 125.6 180 42.8
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 6.1e-27 125.2 185 46.5
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 8.0e-27 124.8 221 36.7
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 8.0e-27 124.8 180 44.4
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 1.4e-26 124.0 180 45.0
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 1.4e-26 124.0 215 38.1
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 1.4e-26 124.0 181 43.6
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 1.4e-26 124.0 191 42.9
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 2.3e-26 123.2 175 45.1
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 4.0e-26 122.5 184 41.3
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 5.2e-26 122.1 189 43.4
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 5.2e-26 122.1 181 42.0
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 6.8e-26 121.7 193 41.5
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 6.8e-26 121.7 183 41.0
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 3.4e-25 119.4 181 41.4
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 1.7e-24 117.1 175 41.1
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 2.2e-24 116.7 173 41.0
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.2e-24 116.7 180 41.1
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 2.8e-24 116.3 215 38.1
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.8e-24 116.3 183 41.5
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 3.7e-24 115.9 185 38.9
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 6.3e-24 115.2 173 42.2
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 8.3e-24 114.8 167 42.5
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 8.3e-24 114.8 174 41.4
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 1.1e-23 114.4 167 41.3
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.1e-23 114.4 182 41.2
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 1.1e-23 114.4 173 41.0
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.4e-23 114.0 174 41.4
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 2.4e-23 113.2 167 41.9
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.4e-23 113.2 189 40.2
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.4e-23 113.2 160 46.9
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 3.1e-23 112.8 173 40.5
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 3.1e-23 112.8 173 41.0
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 4.1e-23 112.5 79 68.4
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 5.4e-23 112.1 190 38.4
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 9.1e-23 111.3 185 38.4
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 9.1e-23 111.3 185 40.0
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 1.0e-21 107.8 174 40.2
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 1.0e-21 107.8 174 40.2
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 1.0e-21 107.8 182 39.6
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 1.0e-21 107.8 174 40.2
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.0e-21 107.8 177 44.1
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.3e-21 107.5 222 36.0
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 1.7e-21 107.1 182 39.0
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 1.7e-21 107.1 185 37.3
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.9e-21 106.3 174 40.8
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 2.9e-21 106.3 171 41.5
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 6.5e-21 105.1 177 43.5
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 1.9e-20 103.6 176 36.9
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 5.5e-20 102.1 174 39.1
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 7.2e-20 101.7 174 39.1
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 2.7e-19 99.8 174 37.4
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 8.8e-18 94.7 129 44.2
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 3.4e-17 92.8 183 38.8
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 3.4e-17 92.8 83 55.4
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 5.4e-15 85.5 162 39.5
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 4.3e-12 75.9 144 38.2
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 2.9e-08 63.2 102 44.1
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 7.0e-07 58.5 32 78.1


User provided reference genes

Program Settings