Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.8e-218 762.3 377 100.0
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.3e-176 623.2 376 77.9
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 1.4e-175 619.8 375 79.2
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.8e-175 619.4 375 77.3
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 1.8e-175 619.4 344 83.7
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.4e-175 619.0 375 78.4
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.4e-175 619.0 375 78.4
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 3.1e-175 618.6 376 76.3
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 9.1e-175 617.1 363 79.1
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.6e-174 616.3 375 77.1
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.6e-174 615.5 375 75.7
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 3.5e-174 615.1 375 76.5
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.0e-173 613.6 376 76.9
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 8.5e-173 610.5 343 83.7
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 1.9e-172 609.4 375 75.2
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 2.5e-172 609.0 376 74.7
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.6e-171 606.3 376 75.3
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 3.6e-171 605.1 375 74.7
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 4.7e-171 604.7 365 77.8
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 4.7e-171 604.7 375 74.7
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 6.1e-171 604.4 387 74.2
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.0e-170 603.6 392 73.5
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.4e-170 603.2 369 75.9
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 3.0e-170 602.1 344 80.5
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 5.2e-170 601.3 345 80.6
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 6.8e-170 600.9 344 80.5
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 8.8e-170 600.5 346 81.8
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.2e-169 600.1 354 79.1
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.5e-169 599.7 374 74.9
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.0e-169 599.4 373 76.9
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.6e-169 599.0 376 75.0
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.4e-169 598.2 344 81.1
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 5.7e-169 597.8 374 74.1
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 7.5e-169 597.4 345 80.6
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.8e-169 597.0 414 72.0
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.3e-168 596.7 376 74.5
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.3e-168 596.7 354 78.5
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.2e-168 595.9 345 80.9
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 3.7e-168 595.1 349 78.5
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.7e-168 595.1 356 77.5
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 3.7e-168 595.1 344 79.1
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 3.7e-168 595.1 353 78.8
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 4.8e-168 594.7 351 78.9
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 6.3e-168 594.3 347 79.0
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 8.3e-168 594.0 377 73.7
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.4e-167 593.2 344 80.8
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.8e-167 592.8 353 77.3
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 2.4e-167 592.4 343 77.8
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 2.4e-167 592.4 344 78.5
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 2.4e-167 592.4 344 78.8
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 2.4e-167 592.4 343 79.0
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 3.1e-167 592.0 377 74.5
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 3.1e-167 592.0 360 76.4
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 4.1e-167 591.7 343 79.9
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 5.4e-167 591.3 370 75.1
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 7.0e-167 590.9 352 77.8
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 7.0e-167 590.9 386 73.3
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 7.0e-167 590.9 386 73.6
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 9.1e-167 590.5 360 78.3
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 1.2e-166 590.1 378 73.3
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.6e-166 589.7 349 77.9
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.6e-166 589.7 378 74.1
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 2.7e-166 589.0 357 78.4
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 2.7e-166 589.0 367 76.3
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 5.9e-166 587.8 345 78.6
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 7.7e-166 587.4 345 78.6
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.0e-165 587.0 368 74.7
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.3e-165 586.6 383 72.8
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.3e-165 586.6 392 73.0
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.9e-165 585.5 350 77.1
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 5.0e-165 584.7 352 76.1
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 5.0e-165 584.7 374 73.5
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 5.0e-165 584.7 346 78.6
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 8.5e-165 583.9 350 76.9
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 8.5e-165 583.9 371 74.4
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 1.9e-164 582.8 377 72.4
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.9e-164 582.8 341 78.9
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 2.5e-164 582.4 341 78.6
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 2.5e-164 582.4 350 76.6
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.2e-164 582.0 341 78.3
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 4.2e-164 581.6 343 78.4
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 7.2e-164 580.9 377 72.7
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 2.7e-163 578.9 383 72.3
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 3.6e-163 578.6 341 78.0
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.0e-162 577.0 343 77.6
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 3.0e-162 575.5 344 77.3
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 8.8e-162 573.9 347 77.5
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 8.8e-162 573.9 341 77.7
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 1.5e-161 573.2 344 78.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 3.4e-161 572.0 341 77.4
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 5.7e-161 571.2 343 76.4
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 7.5e-161 570.9 341 77.1
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 9.8e-161 570.5 341 77.1
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 3.7e-160 568.5 341 77.1
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 2.4e-159 565.8 455 61.1
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 2.9e-157 558.9 343 75.8
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 8.6e-157 557.4 389 70.2
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.8e-155 552.4 344 75.9
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 4.0e-154 548.5 478 58.2
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.5e-148 529.3 356 70.8
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 4.3e-148 528.5 344 70.6
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 5.2e-146 521.5 361 68.7
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 3.4e-145 518.8 353 71.1
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 7.0e-143 511.1 348 70.4
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.2e-142 510.4 304 77.3
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 4.7e-139 498.4 339 67.0
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 8.9e-138 494.2 356 64.6
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 2.0e-137 493.0 341 68.0
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 4.3e-132 475.3 375 63.5
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 5.2e-130 468.4 329 66.0
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 8.9e-130 467.6 270 80.4
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.3e-125 453.0 257 82.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.5e-124 449.5 258 80.2
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 7.8e-118 427.9 312 67.6
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.3e-117 427.2 403 56.6
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 6.6e-117 424.9 339 60.2
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 8.7e-117 424.5 312 67.0
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 1.3e-107 394.0 228 79.8
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.2e-107 391.7 369 56.6
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.1e-106 391.0 232 75.4
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.5e-105 387.1 349 52.7
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.8e-105 385.2 357 57.1
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 3.5e-102 375.9 245 72.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 3.2e-95 352.8 339 51.6
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.3e-93 347.4 220 75.0
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 4.8e-91 339.0 254 66.9
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 8.2e-91 338.2 347 48.7
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 9.0e-90 334.7 190 83.2
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 7.4e-76 288.5 173 76.9
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 7.2e-71 271.9 220 62.3
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 2.9e-64 250.0 165 73.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 1.2e-62 244.6 161 71.4
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 3.8e-48 196.4 114 75.4
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 5.0e-48 196.1 344 36.3
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 6.5e-48 195.7 113 78.8
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-41 174.9 99 83.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 2.0e-41 174.1 248 43.1
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 8.6e-40 168.7 94 81.9
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.3e-39 166.8 365 33.2
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.2e-22 111.7 96 57.3
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.2e-22 111.7 81 66.7
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 2.1e-22 110.9 261 33.3
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.1e-21 107.1 169 42.6
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 8.3e-19 99.0 87 57.5
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.1e-13 82.0 45 82.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 3.0e-08 63.9 41 68.3


User provided reference genes

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