Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.1e-259 897.9 440 100.0
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.3e-121 439.9 460 53.0
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 9.8e-120 434.5 393 57.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.4e-118 430.6 419 54.7
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.7e-117 426.4 388 59.3
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.9e-116 422.9 380 57.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.2e-111 406.8 392 54.6
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.4e-110 404.1 378 55.6
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 3.2e-110 402.9 393 54.2
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.1e-110 402.5 400 53.0
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.7e-109 399.8 374 56.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 7.8e-109 398.3 377 53.6
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.0e-108 397.9 380 54.7
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.3e-108 397.5 384 54.7
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.3e-108 397.5 378 56.1
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 8.6e-108 394.8 385 53.5
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 8.6e-108 394.8 397 52.6
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.5e-107 394.0 393 53.4
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 5.6e-107 392.1 384 53.9
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 5.6e-107 392.1 394 52.5
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.6e-106 390.6 386 54.1
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.3e-105 386.7 365 56.2
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.0e-105 386.0 356 56.7
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 5.2e-105 385.6 356 56.7
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.4e-104 382.5 378 53.2
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 5.8e-104 382.1 414 50.2
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 7.5e-104 381.7 330 57.9
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.2e-103 380.2 386 51.6
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.2e-101 374.4 387 51.9
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.2e-101 374.4 384 51.3
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.6e-101 372.5 377 53.1
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.3e-100 370.2 406 53.7
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.0e-100 369.8 388 51.3
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 5.0e-100 369.0 397 51.9
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.1e-99 367.9 386 51.0
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.5e-99 367.5 413 49.2
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.9e-99 367.1 390 50.5
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.2e-98 364.4 403 49.9
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 9.8e-96 354.8 379 50.1
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.7e-95 354.0 494 41.7
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.2e-95 353.6 394 47.7
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.7e-95 352.8 362 51.7
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 3.7e-95 352.8 476 43.5
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 1.2e-93 347.8 383 50.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 4.6e-93 345.9 379 49.9
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.0e-92 343.2 381 47.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 6.6e-92 342.0 379 47.2
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.3e-91 338.6 377 45.1
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 5.2e-89 332.4 382 45.8
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 6.8e-89 332.0 393 45.8
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.2e-88 331.3 408 43.6
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.5e-88 330.9 297 58.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.6e-88 330.1 383 47.5
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.4e-88 329.3 356 50.3
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.9e-86 323.9 354 48.0
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.1e-86 322.8 389 45.2
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.1e-86 322.0 396 46.7
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.9e-84 316.2 401 45.4
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 1.5e-83 314.3 356 46.3
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.5e-83 314.3 386 44.6
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.9e-83 313.9 383 46.0
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 5.6e-83 312.4 294 55.1
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.6e-82 310.8 388 45.4
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 6.2e-82 308.9 356 46.1
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 6.2e-82 308.9 356 46.1
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 8.1e-82 308.5 359 46.0
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.8e-81 307.4 388 45.1
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.1e-81 306.6 356 45.8
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.4e-80 302.8 376 45.2
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.9e-79 300.1 265 56.6
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 4.9e-79 299.3 286 54.5
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 8.4e-79 298.5 317 50.8
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 4.2e-78 296.2 381 42.3
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.1e-75 288.1 311 48.9
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.5e-75 287.7 273 53.5
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 6.2e-74 282.3 293 51.2
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 3.1e-73 280.0 368 45.1
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.9e-73 278.9 290 52.4
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.2e-70 270.0 209 63.6
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 9.3e-70 268.5 270 52.2
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.0e-69 265.8 227 59.0
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.9e-67 260.8 419 38.7
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.3e-66 258.1 276 44.9
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.8e-66 256.1 260 53.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.4e-65 253.8 245 54.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.4e-65 253.8 279 48.4
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.0e-65 253.1 271 50.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.9e-65 252.3 245 53.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 6.9e-65 252.3 379 38.5
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.6e-64 250.4 378 40.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 6.4e-63 245.7 271 48.7
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 7.1e-62 242.3 401 36.7
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 6.7e-60 235.7 251 50.6
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.1e-59 235.0 243 49.8
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.5e-59 234.6 291 43.0
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 7.4e-59 232.3 277 45.1
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-57 227.6 248 49.6
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 6.9e-57 225.7 192 56.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 2.9e-55 220.3 243 46.9
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 8.4e-55 218.8 258 47.3
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.2e-54 216.9 246 46.7
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 3.2e-54 216.9 232 49.6
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.1e-54 215.7 243 45.7
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 9.3e-54 215.3 213 53.5
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 6.0e-53 212.6 246 46.3
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 7.9e-53 212.2 247 48.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.8e-52 211.1 260 46.9
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 2.3e-52 210.7 241 47.7
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.0e-52 210.3 245 45.7
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.1e-52 209.5 256 47.3
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.1e-51 208.4 280 43.2
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.3e-51 206.5 243 45.7
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 4.3e-51 206.5 256 46.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.7e-51 206.1 296 40.5
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 7.4e-51 205.7 256 47.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.6e-50 204.5 256 45.3
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.6e-50 204.5 257 47.5
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 4.8e-50 203.0 256 45.7
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 6.2e-50 202.6 256 46.9
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.2e-50 202.2 263 45.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-49 201.4 207 53.6
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 5.3e-49 199.5 256 47.3
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 6.9e-49 199.1 262 43.9
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-48 197.6 256 45.7
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 6.1e-45 186.0 273 42.5
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-44 184.1 213 48.4
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.3e-43 179.9 198 48.0
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 9.7e-43 178.7 221 43.0
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 2.0e-40 171.0 133 63.2
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.2e-37 161.8 128 63.3
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 6.7e-36 156.0 177 45.2
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.1e-35 155.2 213 39.9
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 7.4e-35 152.5 235 35.7
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 2.2e-31 141.0 152 48.0
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 3.2e-30 137.1 167 45.5
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.5e-30 136.3 215 35.8
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 3.3e-27 127.1 162 46.3
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.9e-23 114.0 258 30.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 7.5e-19 99.4 65 69.2
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 7.2e-14 82.8 120 45.0
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 2.1e-13 81.3 122 41.8
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 8.8e-12 75.9 120 36.7
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 4.4e-11 73.6 66 54.5
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.2e-10 71.2 55 56.4
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 4.1e-09 67.0 175 29.7
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 9.1e-09 65.9 119 37.0
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.5e-08 63.9 128 32.0
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 7.7e-08 62.8 82 39.0
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-07 61.2 83 37.3


User provided reference genes

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