Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 2.9e-123 445.3 231 100.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.4e-47 192.6 239 51.0
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.4e-47 192.6 239 51.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.7e-46 190.3 230 50.9
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.2e-45 186.0 244 50.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 6.0e-44 181.8 227 50.2
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 7.8e-44 181.4 255 47.1
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 3.9e-43 179.1 244 49.2
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.1e-43 178.7 257 45.5
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 5.1e-43 178.7 280 45.0
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 6.6e-43 178.3 244 47.5
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.5e-42 177.2 260 45.0
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 4.3e-42 175.6 232 48.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.8e-41 172.9 232 47.4
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 4.7e-41 172.2 239 48.5
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 6.2e-41 171.8 260 45.4
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 3.1e-40 169.5 256 44.1
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.5e-39 167.2 250 44.4
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.4e-39 166.0 235 45.5
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 5.8e-39 165.2 232 48.7
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.7e-38 163.7 242 45.5
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.8e-38 162.5 252 43.7
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 8.4e-38 161.4 226 46.5
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.1e-37 161.0 239 44.8
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.4e-37 160.6 240 44.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.9e-37 160.2 230 44.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.4e-37 159.8 238 44.5
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 5.4e-37 158.7 233 43.8
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 9.3e-37 157.9 240 44.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 9.3e-37 157.9 237 44.7
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.2e-36 157.5 246 44.7
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.6e-36 157.1 275 42.2
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.5e-36 156.0 235 45.1
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 4.6e-36 155.6 228 45.2
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 6.0e-36 155.2 231 46.3
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 6.0e-36 155.2 239 48.1
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 6.0e-36 155.2 253 44.3
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 7.8e-36 154.8 232 41.4
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.7e-35 153.7 268 42.2
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.7e-35 153.7 227 45.8
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.7e-35 153.7 267 40.8
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.7e-35 153.7 244 43.0
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.7e-35 153.7 228 43.9
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 2.3e-35 153.3 223 45.3
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.3e-35 153.3 162 52.5
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 5.1e-35 152.1 256 42.6
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 6.6e-35 151.8 248 39.9
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 6.6e-35 151.8 230 43.9
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 8.7e-35 151.4 239 43.1
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.5e-34 150.6 268 41.4
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.5e-34 149.8 259 42.9
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 5.6e-34 148.7 232 42.2
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 7.3e-34 148.3 235 42.1
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.3e-34 148.3 231 44.2
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.6e-33 147.1 228 45.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 2.1e-33 146.7 238 44.1
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 4.8e-33 145.6 222 45.5
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.8e-33 145.6 232 45.7
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 8.1e-33 144.8 248 42.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 8.1e-33 144.8 228 40.4
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.8e-32 143.7 231 42.9
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 4.0e-32 142.5 91 72.5
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 9.0e-32 141.4 227 43.2
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 9.0e-32 141.4 238 41.6
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 9.0e-32 141.4 230 41.7
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.2e-31 141.0 244 41.8
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.2e-31 141.0 232 40.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.2e-31 141.0 245 42.0
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.5e-31 140.6 171 49.1
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.0e-31 140.2 226 41.2
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 2.0e-31 140.2 236 44.5
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 2.0e-31 140.2 242 39.7
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.5e-31 139.0 236 42.8
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.8e-31 138.7 82 75.6
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 7.6e-31 138.3 245 40.4
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 7.6e-31 138.3 82 75.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 7.6e-31 138.3 209 45.0
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.3e-30 137.5 223 41.3
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.9e-30 136.3 246 39.0
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.9e-30 136.3 226 42.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.9e-30 136.3 241 42.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.1e-29 134.4 244 38.9
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 2.4e-29 133.3 241 40.2
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 4.2e-29 132.5 183 43.2
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 5.4e-29 132.1 242 40.1
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 7.1e-29 131.7 218 44.0
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 9.3e-29 131.3 228 41.7
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 9.3e-29 131.3 215 40.0
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 9.3e-29 131.3 244 42.2
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-28 130.6 226 42.0
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.6e-28 130.6 228 42.1
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-28 130.2 228 41.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-28 130.2 228 41.7
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.5e-28 129.4 226 40.7
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 4.6e-28 129.0 86 69.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 6.0e-28 128.6 231 42.0
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 7.9e-28 128.3 236 39.0
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.0e-27 127.9 228 41.2
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.3e-27 127.5 225 40.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.8e-27 127.1 127 57.5
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.3e-27 126.7 228 41.2
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.3e-27 126.7 223 40.8
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.0e-27 126.3 229 41.5
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 5.1e-27 125.6 225 40.9
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.7e-27 125.2 239 39.3
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.5e-26 124.0 234 41.5
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.3e-26 122.9 217 38.7
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.3e-26 122.5 238 38.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.3e-25 120.9 278 38.1
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.3e-25 120.9 148 51.4
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-25 120.2 161 45.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 3.7e-25 119.4 259 36.7
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 4.8e-25 119.0 257 36.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 4.0e-24 115.9 172 43.6
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 5.3e-24 115.5 226 35.4
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-23 113.6 227 37.9
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.6e-23 113.2 226 37.2
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.6e-23 113.2 226 37.2
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 5.8e-23 112.1 227 37.4
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 7.6e-23 111.7 236 38.6
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 2.2e-22 110.2 228 38.2
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.2e-22 110.2 98 59.2
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 4.9e-22 109.0 93 59.1
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 6.4e-22 108.6 231 38.5
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 8.4e-22 108.2 245 35.1
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.1e-21 107.8 179 43.6
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-21 107.1 228 39.5
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.9e-21 107.1 67 74.6
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.5e-21 106.7 163 44.2
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.5e-21 106.7 163 44.2
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 2.5e-21 106.7 105 51.4
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 5.5e-21 105.5 227 36.1
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 9.3e-21 104.8 134 46.3
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.6e-20 104.0 92 53.3
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.5e-18 96.7 235 36.2
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.6e-17 94.0 179 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 4.0e-16 89.4 80 57.5
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 4.0e-16 89.4 94 48.9
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.9e-16 88.6 199 37.2
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 4.3e-10 69.3 163 33.7
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.1e-08 64.7 157 34.4


User provided reference genes

Program Settings