Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.8e-149 531.9 274 100.0
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.6e-104 382.1 280 72.9
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.8e-103 379.8 281 73.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.0e-103 379.0 248 77.8
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 6.8e-103 377.9 287 71.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 3.4e-102 375.6 264 73.1
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 3.4e-102 375.6 281 71.2
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.8e-100 369.8 271 70.1
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.1e-100 368.6 279 71.0
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 7.0e-100 367.9 273 70.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 3.5e-99 365.5 279 71.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.5e-99 365.2 275 68.7
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.3e-98 362.8 280 68.6
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 8.6e-98 360.9 284 68.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 8.6e-98 360.9 237 77.6
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 8.6e-98 360.9 263 74.1
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.2e-97 359.0 283 66.4
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 9.5e-97 357.5 276 68.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.6e-96 356.7 241 75.1
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-96 356.3 270 68.1
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.1e-96 356.3 275 68.0
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.1e-96 356.3 280 68.2
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.8e-96 355.9 283 68.6
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 2.8e-96 355.9 279 67.7
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 8.0e-96 354.4 283 66.4
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.8e-95 353.2 267 69.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.8e-95 353.2 273 65.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.0e-95 352.4 234 76.9
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 6.8e-95 351.3 214 80.4
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.5e-94 350.1 270 67.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.5e-94 350.1 275 66.9
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.6e-94 349.4 245 72.7
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.4e-94 349.0 245 72.7
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.4e-94 348.6 275 66.9
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-93 347.1 266 68.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 2.2e-93 346.3 256 72.7
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.7e-93 345.5 278 68.7
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 4.9e-93 345.1 260 70.4
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.9e-93 345.1 276 68.8
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 6.3e-93 344.7 265 67.9
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 8.3e-93 344.4 276 67.4
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 8.3e-93 344.4 266 69.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-92 344.0 264 67.8
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-92 344.0 266 69.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.4e-92 343.6 256 70.3
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.8e-92 343.2 270 68.9
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.4e-92 342.8 229 73.4
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.4e-92 342.8 279 66.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 5.4e-92 341.7 269 67.7
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 9.2e-92 340.9 267 67.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 9.2e-92 340.9 269 68.4
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.2e-91 340.5 266 67.7
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.2e-91 340.5 238 73.1
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.6e-91 340.1 254 70.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.0e-91 339.7 236 73.3
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.7e-91 339.3 202 82.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.5e-91 339.0 261 69.0
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 4.5e-91 338.6 247 69.6
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 7.8e-91 337.8 213 79.8
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.0e-90 337.4 276 65.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.0e-90 337.4 263 69.2
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.3e-90 337.0 250 70.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.3e-90 336.3 256 69.9
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.8e-90 335.5 250 70.4
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 8.6e-90 334.3 263 70.3
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.3e-89 332.4 226 75.2
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.3e-89 332.0 202 81.7
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.6e-89 331.6 278 65.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 7.3e-89 331.3 242 71.9
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-88 330.5 210 77.6
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.8e-88 329.3 262 65.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.4e-87 327.0 276 64.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 6.8e-87 324.7 214 75.7
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 6.8e-87 324.7 243 69.5
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 6.8e-87 324.7 202 79.7
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 6.8e-87 324.7 209 77.5
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 8.9e-87 324.3 265 66.4
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 8.9e-87 324.3 265 66.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.2e-86 323.9 201 79.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.2e-86 323.9 269 66.5
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.0e-86 323.2 234 72.6
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 5.7e-86 321.6 244 67.6
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-85 320.5 264 60.6
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.2e-85 319.7 248 69.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 2.9e-85 319.3 204 77.9
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 6.4e-85 318.2 235 71.1
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 6.4e-85 318.2 215 75.8
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.1e-84 317.4 231 71.4
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 3.2e-84 315.8 264 66.3
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 4.1e-84 315.5 231 71.0
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 4.1e-84 315.5 231 71.0
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.1e-84 315.5 203 78.3
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.4e-84 315.1 256 66.0
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 7.0e-84 314.7 250 65.2
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 9.2e-84 314.3 264 65.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-83 313.9 205 78.5
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.6e-83 313.5 201 77.1
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 7.8e-83 311.2 205 78.0
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.7e-82 310.1 225 71.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.0e-82 309.3 287 62.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.0e-82 309.3 278 63.3
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.5e-81 307.0 193 78.8
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.5e-81 306.2 186 83.9
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.3e-81 305.4 197 76.6
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 7.3e-81 304.7 277 62.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 9.5e-81 304.3 285 62.5
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 8.0e-80 301.2 229 68.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.8e-79 300.1 242 65.7
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.2e-78 297.4 255 62.4
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 5.8e-78 295.0 186 80.1
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.7e-77 293.5 227 66.5
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.1e-76 290.8 206 72.3
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.4e-76 290.4 177 79.1
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.6e-75 287.0 177 79.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.0e-74 284.3 202 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.3e-74 283.1 199 71.4
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 5.0e-74 282.0 200 71.0
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 4.3e-73 278.9 200 69.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.6e-73 278.5 208 66.3
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.8e-72 276.2 179 76.0
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 5.8e-70 268.5 254 60.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.8e-64 249.6 258 52.7
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.6e-64 249.2 184 68.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.1e-63 247.7 271 56.5
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.8e-63 246.9 259 52.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-62 243.0 165 72.7
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-62 243.0 165 72.7
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.3e-61 240.7 271 54.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-59 234.2 186 65.1
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.1e-59 233.4 171 71.3
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 2.7e-59 233.0 220 53.6
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.5e-57 227.3 257 52.5
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.4e-52 210.7 192 60.4
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 3.5e-51 206.1 130 74.6
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 9.0e-47 191.4 111 82.9
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 9.3e-44 181.4 113 77.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-42 177.6 220 45.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.5e-41 173.3 229 43.7
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 3.4e-38 162.9 219 47.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 7.6e-38 161.8 95 83.2
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 6.7e-34 148.7 88 78.4
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.1e-33 147.9 206 46.1
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.3e-26 124.4 207 36.2
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 9.7e-25 118.2 125 52.8
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.6e-24 117.5 204 38.2
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.7e-24 116.3 78 73.1
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.8e-23 114.0 70 75.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 2.4e-23 113.6 211 33.6
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.0e-22 110.5 205 35.1
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 4.2e-20 102.8 162 40.1
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.3e-17 93.2 203 32.5
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 4.1e-15 86.3 66 63.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.9e-13 80.1 113 46.0
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 6.5e-13 79.0 65 58.5
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.5e-09 67.8 71 57.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 3.3e-09 66.6 152 34.9
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 7.4e-09 65.5 38 81.6
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 6.9e-07 58.9 55 56.4
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 6.9e-07 58.9 55 56.4
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 2.6e-06 57.0 62 50.0


User provided reference genes

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