Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 3591.2 1832 100.0
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2107.0 1676 66.4
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2106.6 1685 65.2
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2097.8 1698 65.3
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2095.1 1646 66.6
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2071.6 1664 64.5
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2019.6 1655 63.8
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2009.2 1663 63.7
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2004.9 1659 64.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 1998.4 1667 63.2
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 1993.8 1686 62.8
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1965.3 1670 63.0
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 1950.6 1711 61.5
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 1944.1 1667 62.2
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 1906.3 1792 58.5
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 1904.0 1670 61.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1896.3 1667 60.3
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1889.8 1661 60.6
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1874.8 1657 60.5
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1873.2 1661 60.9
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1872.4 1651 60.9
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 1867.4 1666 60.9
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1867.4 1668 60.3
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1866.7 1654 60.8
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1865.9 1659 60.6
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 1865.9 1662 59.9
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 1860.1 1660 60.1
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1858.6 1674 59.9
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1854.0 1666 60.3
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 1848.9 1680 60.0
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1841.6 1655 60.2
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1835.1 1663 60.0
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 1833.2 1662 59.6
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1827.4 1661 59.4
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1824.7 1680 59.2
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1822.8 1674 59.1
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1822.8 1662 58.8
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1818.9 1672 59.1
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 1817.0 1674 59.0
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 1812.3 1669 58.7
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1805.0 1663 57.7
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1803.9 1705 58.0
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1802.7 1663 58.6
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 1802.3 1675 58.5
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1799.3 1668 58.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1798.1 1720 57.0
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1784.2 1669 58.8
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 1782.3 1802 55.7
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 1781.9 1665 58.6
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1777.3 1663 58.3
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1771.9 1666 59.1
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1771.1 1672 58.7
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1763.8 1669 57.6
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1758.4 1666 58.0
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1757.3 1650 58.2
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1752.6 1661 58.2
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1746.5 1652 58.8
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1745.3 1705 56.6
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1744.9 1726 56.5
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1731.1 1667 57.5
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1726.1 1648 58.4
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1724.5 1705 56.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1702.6 1681 56.5
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1697.9 1661 56.0
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1689.9 1653 56.6
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1685.6 1682 55.0
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1655.2 1670 55.9
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1651.0 1651 55.3
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1644.4 1664 54.7
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1640.9 1663 54.5
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1638.2 1661 54.6
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1634.4 1658 54.3
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1633.2 1669 55.4
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1617.4 1440 60.7
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1612.4 1668 54.2
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1610.1 1671 54.1
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1604.7 1833 51.7
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1601.6 1665 54.9
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1596.3 1674 53.6
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1592.8 1652 54.3
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1591.2 1642 53.9
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1582.8 1640 53.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1575.1 1630 53.4
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1569.7 1557 55.7
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1567.7 1671 53.0
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1557.7 1661 53.2
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1548.9 1680 53.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1548.5 1663 52.8
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1545.8 1695 52.3
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1520.8 1561 54.3
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1463.7 1702 50.3
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1443.7 1668 50.5
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1316.2 1184 60.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1265.8 1335 54.7
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1250.0 1302 54.9
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1237.6 1654 45.7
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1218.0 1108 58.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1209.1 1024 62.9
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1186.8 1162 56.5
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1080.5 1521 43.6
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.4e-307 1058.9 1175 51.9
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 9.2e-281 971.5 1219 46.1
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.3e-238 830.1 1088 44.7
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 9.7e-222 775.4 859 53.1
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 6.1e-216 756.1 1806 33.7
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.2e-206 725.3 1809 33.0
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 2.2e-181 641.3 1770 31.6
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.0e-175 620.5 463 67.8
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 4.9e-173 613.6 1001 40.0
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.7e-171 607.8 1623 31.8
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 1.9e-169 601.7 449 68.6
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 8.4e-165 586.3 646 52.6
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.4e-164 585.5 463 65.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 5.4e-164 583.6 555 57.1
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 6.6e-162 576.6 649 48.7
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 9.3e-156 556.2 448 65.0
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.4e-148 530.4 715 43.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 8.1e-144 516.5 1599 30.0
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 3.1e-127 461.5 498 52.6
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 7.4e-121 440.3 465 51.2
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.4e-111 408.7 778 38.6
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.2e-102 379.8 416 49.8
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 7.7e-102 377.1 505 45.7
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 9.4e-100 370.2 328 61.0
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 3.0e-98 365.2 373 53.4
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 7.5e-97 360.5 220 77.3
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 2.4e-95 355.5 656 36.6
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.5e-86 325.1 382 52.1
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.7e-85 322.8 246 63.4
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 2.0e-70 272.7 167 78.4
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 6.2e-67 261.2 163 77.3
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.1e-66 258.8 159 77.4
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 2.6e-65 255.8 294 49.7
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.1e-59 236.1 211 61.1
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 3.4e-57 228.8 158 73.4
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 5.8e-57 228.0 165 67.9
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 3.6e-51 208.8 259 47.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 3.6e-51 208.8 233 50.2
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 3.4e-49 202.2 415 38.1
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.4e-47 194.9 125 72.8
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 6.6e-45 188.0 104 74.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-44 184.1 664 27.3
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.1e-43 183.0 92 85.9
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 4.8e-43 181.8 323 37.8
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 5.3e-42 178.3 390 36.4
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.0e-41 176.4 325 36.3
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.1e-39 170.6 463 33.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 5.1e-37 161.8 130 67.7
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 5.1e-37 161.8 608 27.1
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 3.0e-29 136.0 90 71.1
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.9e-28 133.3 73 82.2
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.6e-22 112.1 126 50.0
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 1.1e-20 107.5 109 53.2
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 9.0e-18 97.8 104 56.7
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 9.0e-18 97.8 104 56.7
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.6e-17 96.3 131 51.1
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.8e-16 92.4 143 47.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-15 90.9 116 46.6
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-15 90.9 133 42.9
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 3.2e-15 89.4 152 42.8
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 6.1e-14 85.1 109 45.0
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 6.1e-14 85.1 109 45.0
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 6.1e-14 85.1 57 66.7
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.9e-12 80.1 67 58.2
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-08 67.0 127 39.4
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 7.2e-07 61.6 89 37.1
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 1.2e-06 60.8 52 63.5
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 2.7e-06 59.7 117 33.3


User provided reference genes

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