Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 3.2e-81 305.1 158 100.0
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 5.5e-57 224.6 158 70.9
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 9.4e-57 223.8 158 70.3
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.7e-56 222.2 158 70.3
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.3e-55 219.2 158 70.3
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 2.3e-55 219.2 159 69.8
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 5.2e-55 218.0 158 69.0
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 8.8e-55 217.2 152 69.1
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 8.8e-55 217.2 157 66.9
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.1e-54 216.9 154 69.5
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 1.5e-54 216.5 155 67.1
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.6e-54 215.7 158 69.0
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 2.6e-54 215.7 158 69.6
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 3.3e-54 215.3 158 67.7
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 3.3e-54 215.3 158 67.7
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 4.4e-54 214.9 149 71.8
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 7.5e-54 214.2 156 67.3
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 9.7e-54 213.8 155 66.5
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 9.7e-54 213.8 152 69.1
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 9.7e-54 213.8 154 68.8
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 9.7e-54 213.8 155 67.7
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.3e-53 213.4 151 68.9
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.7e-53 213.0 158 67.1
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 2.2e-53 212.6 158 68.4
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 2.8e-53 212.2 155 69.7
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 3.7e-53 211.8 158 68.4
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 3.7e-53 211.8 155 66.5
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 6.3e-53 211.1 154 66.9
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 6.3e-53 211.1 158 64.6
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 8.2e-53 210.7 155 66.5
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 1.1e-52 210.3 158 68.4
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.1e-52 210.3 159 68.6
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 1.1e-52 210.3 154 66.2
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.1e-52 210.3 151 69.5
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 1.1e-52 210.3 151 69.5
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 1.4e-52 209.9 159 67.3
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 1.4e-52 209.9 152 67.1
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 1.8e-52 209.5 155 65.8
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 1.8e-52 209.5 155 65.8
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 4.1e-52 208.4 155 66.5
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 4.1e-52 208.4 155 67.7
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 5.3e-52 208.0 155 64.5
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 5.3e-52 208.0 156 66.7
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 7.0e-52 207.6 155 64.5
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 7.0e-52 207.6 154 67.5
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 9.1e-52 207.2 149 68.5
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 9.1e-52 207.2 158 63.3
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.2e-51 206.8 155 63.2
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.6e-51 206.5 158 66.5
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 2.0e-51 206.1 159 66.7
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 2.0e-51 206.1 154 65.6
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 2.7e-51 205.7 151 66.9
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 3.5e-51 205.3 153 65.4
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 1.0e-50 203.8 156 67.3
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.0e-50 203.8 155 63.9
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 1.7e-50 203.0 155 67.7
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.9e-50 202.2 156 64.7
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 3.8e-50 201.8 153 64.1
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 6.5e-50 201.1 150 64.7
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 8.5e-50 200.7 151 66.2
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.5e-49 199.9 175 60.0
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 1.5e-49 199.9 154 64.3
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 1.9e-49 199.5 155 65.2
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.2e-49 198.7 150 64.7
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 7.2e-49 197.6 164 62.2
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.2e-48 196.8 150 64.0
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 1.6e-48 196.4 154 63.6
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 2.1e-48 196.1 159 61.6
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 2.1e-48 196.1 159 61.6
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 2.7e-48 195.7 152 61.2
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 3.6e-48 195.3 158 63.9
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 3.6e-48 195.3 155 66.5
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 4.7e-48 194.9 150 65.3
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 4.7e-48 194.9 155 65.8
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 6.1e-48 194.5 150 64.0
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 6.1e-48 194.5 155 65.2
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 8.0e-48 194.1 149 65.1
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 3.0e-47 192.2 160 63.1
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 6.8e-47 191.0 150 62.7
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 6.8e-47 191.0 155 63.2
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.5e-46 189.9 159 61.0
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 5.7e-46 188.0 155 62.6
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 7.5e-46 187.6 159 59.7
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.3e-45 186.8 157 59.2
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.2e-45 186.0 159 59.1
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.8e-45 185.7 155 61.3
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 4.8e-45 184.9 153 59.5
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 1.6e-43 179.9 133 63.2
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 3.5e-43 178.7 143 65.0
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.0e-42 177.2 179 53.6
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 3.8e-42 175.3 153 57.5
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.2e-40 170.2 139 61.9
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 3.6e-40 168.7 153 54.9
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.8e-39 166.4 153 53.6
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.8e-39 164.5 133 59.4
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 1.4e-36 156.8 151 53.0
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 1.8e-36 156.4 151 53.0
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 3.8e-34 148.7 164 52.4
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.0e-31 140.6 97 69.1
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 8.9e-31 137.5 102 67.6
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 4.4e-30 135.2 101 66.3
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 9.8e-30 134.0 164 45.7
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 4.9e-29 131.7 90 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 8.3e-29 131.0 155 48.4
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 2.4e-28 129.4 93 66.7
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 2.5e-25 119.4 79 74.7
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 8.0e-24 114.4 78 67.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 1.8e-23 113.2 81 66.7
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 1.8e-23 113.2 81 66.7
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 3.4e-22 109.0 81 65.4
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 9.8e-22 107.5 76 67.1
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 3.5e-19 99.0 81 64.2
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 2.5e-17 92.8 65 69.2
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 7.5e-14 81.3 65 58.5
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 9.2e-12 74.3 128 38.3
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 6.6e-10 68.2 78 53.8
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.9e-09 66.6 54 57.4
Haze_26658 Corylus avellana HOM05D002214 ORTHO05D005113 8.1e-08 61.2 106 39.6
TWI53G0951 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 8.1e-08 61.2 106 39.6
TWI53G1910 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 8.1e-08 61.2 106 39.6
AL6G24400 Arabidopsis lyrata HOM05D002214 ORTHO05D005113 3.1e-07 59.3 106 38.7
AT5G13780 Arabidopsis thaliana HOM05D002214 ORTHO05D005113 3.1e-07 59.3 106 38.7
Carub.0006s1196 Capsella rubella HOM05D002214 ORTHO05D005113 3.1e-07 59.3 106 38.7
PRCOL_00004224 Prasinoderma coloniale HOM05D002214 ORTHO05D005113 5.2e-07 58.5 110 37.3
TWI09G0624 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 1.5e-06 57.0 106 38.7
CiPaw.14G003300 Carya illinoinensis HOM05D002214 ORTHO05D005113 4.4e-06 55.5 106 38.7
Peaxi162Scf01270g00125 Petunia axillaris HOM05D002214 ORTHO05D005113 9.9e-06 54.3 106 35.8


User provided reference genes

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