Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 6.5e-109 399.1 628 100.0
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 3.2e-55 220.7 195 57.9
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 8.6e-53 212.6 184 57.6
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 4.3e-52 210.3 171 57.9
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 6.2e-51 206.5 169 56.8
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 5.2e-50 203.4 171 59.6
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.2e-49 202.2 188 55.3
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.6e-49 201.1 169 59.2
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 3.4e-49 200.7 188 55.3
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 4.4e-49 200.3 183 56.3
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 2.2e-48 198.0 180 54.4
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 2.2e-48 198.0 167 56.9
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 3.7e-48 197.2 170 56.5
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 3.7e-48 197.2 188 54.3
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 1.9e-47 194.9 170 55.9
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 2.4e-47 194.5 171 57.3
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 2.4e-47 194.5 171 57.3
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 3.2e-47 194.1 171 57.3
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 7.1e-47 193.0 168 53.6
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.1e-47 193.0 185 49.7
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 9.2e-47 192.6 171 54.4
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 4.6e-46 190.3 171 56.7
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 7.8e-46 189.5 168 53.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.8e-46 189.5 185 49.7
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 7.8e-46 189.5 164 54.3
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.0e-45 189.1 169 55.0
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.3e-45 188.7 167 55.1
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 3.0e-45 187.6 167 55.7
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 5.1e-45 186.8 168 53.6
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 5.1e-45 186.8 177 54.8
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 1.5e-44 185.3 187 51.3
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 1.5e-44 185.3 171 52.6
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 3.3e-44 184.1 161 53.4
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 5.6e-44 183.3 171 54.4
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 9.6e-44 182.6 201 49.3
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 4.0e-42 177.2 161 54.7
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 5.2e-42 176.8 150 58.0
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.4e-41 174.1 185 47.6
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 5.8e-41 173.3 159 53.5
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 7.6e-41 172.9 174 51.1
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.3e-40 172.2 173 49.1
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 4.9e-40 170.2 156 53.8
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.1e-39 169.1 215 48.8
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 5.4e-39 166.8 139 56.8
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 7.1e-39 166.4 148 52.7
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 1.7e-37 161.8 171 51.5
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 2.3e-37 161.4 160 52.5
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 6.6e-37 159.8 172 47.1
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 1.5e-36 158.7 147 52.4
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.5e-36 157.9 185 47.0
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 4.3e-36 157.1 124 61.3
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 5.6e-36 156.8 160 50.6
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 1.4e-34 152.1 172 48.3
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.8e-34 151.8 158 50.0
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 2.4e-34 151.4 180 42.8
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 4.0e-34 150.6 172 47.1
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 9.0e-34 149.4 173 48.0
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 3.4e-33 147.5 142 51.4
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 3.4e-33 147.5 160 48.1
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 3.4e-33 147.5 163 46.0
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 2.2e-32 144.8 167 44.9
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 3.8e-32 144.1 178 47.2
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 6.4e-32 143.3 199 44.2
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 6.4e-32 143.3 199 44.2
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.1e-31 142.5 153 45.8
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.4e-31 142.1 190 44.7
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 2.4e-31 141.4 143 49.7
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 2.4e-31 141.4 150 46.7
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 2.4e-31 141.4 136 52.2
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 3.2e-31 141.0 183 43.2
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 3.2e-31 141.0 177 46.3
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 5.4e-31 140.2 131 51.9
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 9.3e-31 139.4 136 48.5
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 4.6e-30 137.1 126 52.4
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 6.0e-30 136.7 172 44.2
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 2.3e-29 134.8 171 42.7
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 8.7e-29 132.9 119 55.5
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 2.5e-28 131.3 128 50.0
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 5.6e-28 130.2 172 41.9
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 6.2e-27 126.7 86 90.7
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 8.1e-27 126.3 121 50.4
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.4e-26 125.6 88 71.6
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 1.4e-26 125.6 133 45.9
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 2.4e-26 124.8 127 48.0
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 5.3e-26 123.6 86 89.5
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 5.3e-26 123.6 169 38.5
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 1.2e-25 122.5 116 50.0
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 1.5e-25 122.1 116 50.0
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 3.4e-25 120.9 189 40.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 4.5e-25 120.6 109 54.1
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 4.5e-25 120.6 86 84.9
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 7.6e-25 119.8 84 86.9
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 9.9e-25 119.4 172 41.9
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 9.9e-25 119.4 202 36.6
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.3e-24 119.0 103 48.5
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.3e-24 119.0 135 43.7
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 4.9e-24 117.1 84 88.1
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.4e-23 114.8 194 37.1
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 5.4e-23 113.6 84 81.0
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 3.5e-22 110.9 85 63.5
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 6.0e-22 110.2 197 34.5
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 7.4e-20 103.2 81 59.3
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 1.1e-18 99.4 80 58.8
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.0e-16 92.8 86 55.8
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 3.2e-15 87.8 84 69.0
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 1.3e-11 75.9 84 65.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.1e-10 72.8 58 62.1
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 9.0e-10 69.7 42 73.8
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.5e-09 68.9 61 57.4
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 8.4e-08 63.2 51 64.7
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 3.2e-07 61.2 93 29.0
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 1.2e-06 59.3 130 31.5
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 1.2e-06 59.3 111 33.3
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 1.6e-06 58.9 128 28.9
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 1.6e-06 58.9 85 35.3
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 2.7e-06 58.2 104 34.6
Sopen04g004350 Solanum pennellii HOM05D007202 ORTHO05D009125 2.7e-06 58.2 142 27.5
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 4.6e-06 57.4 132 33.3
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 6.1e-06 57.0 95 31.6
TAR362G0078 Trochodendron aralioides HOM05D007661 ORTHO05D009671 6.1e-06 57.0 81 35.8


User provided reference genes

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