Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.2e-142 510.0 280 100.0
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 5.5e-100 368.2 209 90.4
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.6e-41 173.3 172 54.1
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 3.0e-29 133.3 137 48.9
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.9e-29 132.9 155 46.5
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 5.1e-29 132.5 137 50.4
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 6.6e-29 132.1 155 45.8
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 8.6e-29 131.7 155 46.5
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 8.6e-29 131.7 155 46.5
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-28 131.3 155 45.8
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 1.5e-28 131.0 144 50.7
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.9e-28 130.6 137 46.7
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 2.5e-28 130.2 145 48.3
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 2.5e-28 130.2 143 51.0
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.3e-28 129.8 137 43.1
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.3e-28 129.4 138 50.7
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 5.6e-28 129.0 137 48.2
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.3e-28 128.6 137 49.6
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 7.3e-28 128.6 138 48.6
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.2e-27 127.9 138 49.3
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.1e-27 127.1 137 43.1
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.1e-27 127.1 189 39.2
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.1e-27 127.1 137 48.2
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.6e-27 126.3 137 43.8
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 4.7e-27 125.9 137 50.4
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.7e-27 125.9 138 47.8
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.4e-26 124.4 155 47.1
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 1.8e-26 124.0 137 48.2
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.8e-26 124.0 155 44.5
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.8e-26 124.0 141 44.7
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.3e-26 123.6 137 42.3
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 3.1e-26 123.2 147 44.9
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 4.0e-26 122.9 137 46.0
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 5.2e-26 122.5 147 44.9
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 5.2e-26 122.5 147 44.9
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 5.2e-26 122.5 178 42.1
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 6.8e-26 122.1 151 45.0
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 6.8e-26 122.1 142 45.1
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.9e-26 121.7 137 42.3
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-25 121.3 154 43.5
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.2e-25 121.3 157 42.7
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.2e-25 121.3 138 47.1
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.5e-25 120.9 141 41.1
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 1.5e-25 120.9 127 51.2
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 2.6e-25 120.2 152 43.4
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 5.8e-25 119.0 135 47.4
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.3e-24 117.9 127 49.6
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.3e-24 117.9 127 49.6
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.7e-24 117.5 137 44.5
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.7e-24 117.5 181 43.6
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 4.9e-24 115.9 143 42.7
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 4.9e-24 115.9 137 43.8
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 4.9e-24 115.9 147 40.8
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 4.9e-24 115.9 147 42.9
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 6.4e-24 115.5 132 50.0
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 8.4e-24 115.2 216 37.0
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.9e-23 114.0 147 40.1
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 2.4e-23 113.6 146 39.0
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.2e-23 111.7 156 41.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 1.2e-22 111.3 141 41.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.6e-22 110.9 135 43.7
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.6e-22 110.9 145 43.4
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 2.1e-22 110.5 146 44.5
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.7e-22 110.2 135 43.0
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.6e-22 109.4 135 43.0
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 4.6e-22 109.4 142 45.1
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 7.8e-22 108.6 135 43.0
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.0e-21 108.2 139 42.4
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.0e-21 108.2 138 42.8
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.0e-21 106.7 136 42.6
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 3.9e-21 106.3 139 44.6
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 5.1e-21 105.9 141 39.7
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.5e-20 104.4 139 42.4
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 3.3e-20 103.2 149 39.6
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 3.6e-19 99.8 137 40.1
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 6.2e-19 99.0 141 39.0
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 6.2e-19 99.0 141 39.0
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 8.1e-19 98.6 137 39.4
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.8e-18 97.4 135 39.3
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 2.4e-18 97.1 135 39.3
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 2.4e-18 97.1 135 39.3
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 2.4e-18 97.1 139 42.4
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 6.8e-18 95.5 144 39.6
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 8.9e-18 95.1 149 36.9
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 8.9e-18 95.1 138 38.4
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.2e-17 94.7 117 45.3
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.0e-17 94.0 135 38.5
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.4e-17 92.8 135 37.0
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.9e-17 91.7 112 43.8
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.3e-16 91.3 122 43.4
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 1.3e-16 91.3 122 43.4
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 3.8e-16 89.7 135 37.8
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.4e-16 89.0 79 53.2
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.9e-15 87.4 191 32.5
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.4e-15 85.9 91 47.3
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.2e-14 84.7 113 40.7
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 2.7e-14 83.6 141 37.6
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 7.8e-14 82.0 124 37.1
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.0e-13 81.6 142 37.3
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-13 80.5 135 40.7
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 3.0e-13 80.1 182 37.4
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 8.7e-13 78.6 89 46.1
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 1.9e-12 77.4 102 42.2
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 2.5e-12 77.0 83 43.4
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.3e-12 76.3 135 34.8
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 7.3e-12 75.5 138 35.5
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 9.6e-12 75.1 96 44.8
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 9.6e-12 75.1 86 44.2
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 4.8e-11 72.8 63 55.6
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-10 70.9 137 33.6
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 5.3e-10 69.3 85 43.5
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 5.3e-10 69.3 96 39.6
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 6.9e-10 68.9 137 34.3
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.5e-09 67.8 90 41.1
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.4e-09 66.2 74 50.0
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 9.9e-09 65.1 58 53.4
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.9e-07 60.8 196 32.7
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 1.9e-07 60.8 116 34.5
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.4e-07 60.5 139 29.5
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 5.4e-07 59.3 52 55.8
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 5.4e-07 59.3 69 42.0
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.2e-06 58.2 97 42.3
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.2e-06 58.2 97 42.3
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.2e-06 58.2 95 40.0
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 2.7e-06 57.0 96 33.3
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 2.7e-06 57.0 97 41.2
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.5e-06 56.6 95 38.9
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.5e-06 56.6 95 38.9
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 3.5e-06 56.6 110 33.6
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 4.6e-06 56.2 76 42.1
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 7.9e-06 55.5 143 30.8


User provided reference genes

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