Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0002170 Simmondsia chinensis HOM05D004529 ORTHO05D005884 0.0e+00 1427.5 720 100.0
Hund01213 Selenicereus undatus HOM05D004529 ORTHO05D005884 7.1e-59 233.0 390 38.7
TAR627G0950 Trochodendron aralioides HOM05D004529 ORTHO05D005884 8.1e-55 219.5 430 36.3
MBI02_g39755_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 7.3e-48 196.4 381 36.2
Cfa014497 Carpinus fangiana HOM05D004529 ORTHO05D005884 1.7e-44 185.3 413 33.2
Cfa014498 Carpinus fangiana HOM05D004529 ORTHO05D005884 1.7e-44 185.3 413 33.2
Haze_13045 Corylus avellana HOM05D004529 ORTHO05D005884 2.4e-43 181.4 413 33.2
PSO675G1505 Papaver somniferum HOM05D004529 ORTHO05D005884 1.9e-40 171.8 330 35.8
PSO541G4256 Papaver somniferum HOM05D004529 ORTHO05D005884 1.3e-39 169.1 353 36.0
Prupe.3G227600 Prunus persica HOM05D004529 ORTHO05D005884 4.8e-39 167.2 340 34.7
Thecc.02G167600 Theobroma cacao HOM05D004529 ORTHO05D005884 9.0e-38 162.9 367 33.8
Cpa.g.sc34.61 Carica papaya HOM05D040545 ORTHO05D005884 8.4e-36 156.4 345 31.6
MD17G1087100 Malus domestica HOM05D004529 ORTHO05D005884 2.1e-34 151.8 337 33.8
Dinv02574 Davidia involucrata HOM05D004529 ORTHO05D005884 1.8e-33 148.7 376 30.6
Atru.chr6.3093 Acer truncatum HOM05D004529 ORTHO05D005884 2.3e-33 148.3 339 32.4
MBI03_g26653_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 5.1e-33 147.1 230 38.7
Actinidia34683 Actinidia chinensis HOM05D004529 ORTHO05D005884 2.4e-30 138.3 332 31.9
TAR371G0876 Trochodendron aralioides HOM05D004529 ORTHO05D005884 4.0e-30 137.5 228 39.9
TAR629G2105 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.2e-29 136.0 237 38.4
Dinv06405 Davidia involucrata HOM05D004529 ORTHO05D005884 1.5e-29 135.6 421 28.7
FvH4_6g44320 Fragaria vesca HOM05D004529 ORTHO05D005884 2.0e-29 135.2 315 33.3
TAR629G0199 Trochodendron aralioides HOM05D004529 ORTHO05D005884 3.4e-29 134.4 237 38.0
CSS0033935 Camellia sinensis var. sinensis HOM05D004529 ORTHO05D005884 4.5e-29 134.0 226 37.2
QL10p034152 Quercus lobata HOM05D004529 ORTHO05D005884 4.5e-29 134.0 343 29.7
FAN05G1920 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.2e-28 131.7 307 31.9
VMungo0464G1978 Vigna mungo HOM05D004529 ORTHO05D005884 2.2e-28 131.7 358 30.7
MBI06_g11152_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 2.9e-28 131.3 397 30.0
Atru.chr9.71 Acer truncatum HOM05D004529 ORTHO05D005884 4.9e-28 130.6 349 29.2
FAN14G2835 Fragaria x ananassa HOM05D004529 ORTHO05D005884 4.9e-28 130.6 307 32.6
ATR0618G236 Amborella trichopoda HOM05D004529 ORTHO05D005884 6.5e-28 130.2 243 36.6
Cpa.g.sc34.58 Carica papaya HOM05D004529 ORTHO05D005884 6.5e-28 130.2 135 46.7
Nitab4.5_0003040g0050 Nicotiana tabacum HOM05D004529 ORTHO05D005884 6.5e-28 130.2 227 36.1
vmacro17741 Vaccinium macrocarpon HOM05D004529 ORTHO05D005884 6.5e-28 130.2 228 37.3
Glyma.09G164300 Glycine max HOM05D004529 ORTHO05D005884 8.4e-28 129.8 365 31.5
Glyma.16G212800 Glycine max HOM05D004529 ORTHO05D005884 8.4e-28 129.8 364 30.2
Phvul.004G138850 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 8.4e-28 129.8 361 30.5
Phvul.L001671 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 8.4e-28 129.8 361 30.5
FAN02G0641 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.1e-27 129.4 370 31.1
RcHm_v2.0_Chr7g0177041 Rosa chinensis HOM05D004529 ORTHO05D005884 1.4e-27 129.0 359 30.4
Nitab4.5_0000782g0040 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.9e-27 128.6 328 32.6
RcHm_v2.0_Chr2g0161201 Rosa chinensis HOM05D004529 ORTHO05D005884 1.9e-27 128.6 304 33.6
FAN08G2030 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.5e-27 128.3 370 28.9
RcHm_v2.0_Chr7g0177561 Rosa chinensis HOM05D004529 ORTHO05D005884 9.3e-27 126.3 373 29.8
Dinv11730 Davidia involucrata HOM05D004529 ORTHO05D005884 3.5e-26 124.4 381 29.7
Duzib128G0682 Durio zibethinus HOM05D004529 ORTHO05D005884 3.5e-26 124.4 294 33.0
FAN04G1556 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.5e-26 124.4 369 29.3
FAN09G3058 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.5e-26 124.4 308 31.8
Potri.013G149400 Populus trichocarpa HOM05D004529 ORTHO05D005884 7.9e-26 123.2 365 29.6
Prupe.5G240600 Prunus persica HOM05D004529 ORTHO05D005884 7.9e-26 123.2 382 30.9
Sabra17G0125600 Salix brachista HOM05D004529 ORTHO05D005884 7.9e-26 123.2 357 29.7
MD06G1235900 Malus domestica HOM05D004529 ORTHO05D005884 1.0e-25 122.9 358 29.6
Gohir.A13G089790 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.3e-25 122.5 230 34.8
Potri.017G152601 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.3e-25 122.5 348 29.3
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.8e-25 122.1 349 28.4
Lj9P233T36 Lonicera japonica HOM05D004529 ORTHO05D005884 1.8e-25 122.1 210 36.2
Lj5A167G40 Lonicera japonica HOM05D004529 ORTHO05D005884 2.3e-25 121.7 709 25.5
Thecc.05G197800 Theobroma cacao HOM05D004529 ORTHO05D005884 2.3e-25 121.7 361 29.6
Peaxi162Scf00171g00234 Petunia axillaris HOM05D004529 ORTHO05D005884 3.0e-25 121.3 224 34.8
PGSC0003DMG400010150 Solanum tuberosum HOM05D004529 ORTHO05D005884 3.0e-25 121.3 369 27.1
CDE08G0908 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 3.9e-25 120.9 207 36.2
Lj9P411T44 Lonicera japonica HOM05D004529 ORTHO05D005884 5.1e-25 120.6 327 28.1
Duzib177G0816 Durio zibethinus HOM05D004529 ORTHO05D005884 8.7e-25 119.8 376 27.7
MD14G1242900 Malus domestica HOM05D004529 ORTHO05D005884 1.1e-24 119.4 237 35.4
Gohir.D13G158400 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.5e-24 118.2 205 37.1
Rhsim08G0124700 Rhododendron simsii HOM05D004529 ORTHO05D005884 2.5e-24 118.2 383 28.5
Gorai.013G179100 Gossypium raimondii HOM05D004529 ORTHO05D005884 3.3e-24 117.9 205 37.6
FvH4_5g18040 Fragaria vesca HOM05D004529 ORTHO05D005884 4.3e-24 117.5 371 28.0
CANSAT64G3027 Cannabis sativa HOM05D004529 ORTHO05D005884 5.7e-24 117.1 231 36.8
Haze_18337 Corylus avellana HOM05D004529 ORTHO05D005884 5.7e-24 117.1 376 28.5
Gohir.A13G153800 Gossypium hirsutum HOM05D004529 ORTHO05D005884 5.7e-24 117.1 205 34.6
Psat0s1805g0040 Pisum sativum HOM05D004529 ORTHO05D005884 5.7e-24 117.1 347 30.3
Sabra04G0046400 Salix brachista HOM05D004529 ORTHO05D005884 5.7e-24 117.1 346 28.3
Solyc03g098630.4 Solanum lycopersicum HOM05D004529 ORTHO05D005884 7.4e-24 116.7 229 32.3
VMungo0464G0747 Vigna mungo HOM05D004529 ORTHO05D005884 7.4e-24 116.7 357 30.3
ClCG01G014790 Citrullus lanatus HOM05D004529 ORTHO05D005884 9.6e-24 116.3 265 31.3
FAN18G3802 Fragaria x ananassa HOM05D004529 ORTHO05D005884 9.6e-24 116.3 366 28.1
Sed0013312 Sechium edule HOM05D004529 ORTHO05D005884 9.6e-24 116.3 233 35.2
Nitab4.5_0000339g0110 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.3e-23 115.9 235 33.6
Nitab4.5_0000033g0370 Nicotiana tabacum HOM05D004529 ORTHO05D005884 2.8e-23 114.8 235 33.2
PGR083G0180 Punica granatum HOM05D004529 ORTHO05D005884 3.7e-23 114.4 354 29.9
CAN.G929.20 Capsicum annuum HOM05D004529 ORTHO05D005884 4.8e-23 114.0 369 25.7
arahy.Tifrunner.gnm1.ann1.1UV8VN Arachis hypogaea HOM05D004529 ORTHO05D005884 6.2e-23 113.6 350 28.3
Ciclev10018551m.g Citrus clementina HOM05D004529 ORTHO05D005884 6.2e-23 113.6 354 28.5
GSVIVG01024252001 Vitis vinifera HOM05D004529 ORTHO05D005884 1.4e-22 112.5 353 30.0
arahy.Tifrunner.gnm1.ann1.FEKM9F Arachis hypogaea HOM05D004529 ORTHO05D005884 1.8e-22 112.1 354 29.7
Eucgr.H00653 Eucalyptus grandis HOM05D004529 ORTHO05D005884 1.8e-22 112.1 226 35.0
FAN13G2071 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.8e-22 112.1 210 35.2
CsaV3_1G007540 Cucumis sativus L. HOM05D004529 ORTHO05D005884 2.4e-22 111.7 230 36.1
Lalb_Chr24g0398601 Lupinus albus HOM05D004529 ORTHO05D005884 2.4e-22 111.7 361 27.1
Potri.004G068700 Populus trichocarpa HOM05D004529 ORTHO05D005884 3.1e-22 111.3 347 27.1
TWI81G0141 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 4.0e-22 110.9 344 27.9
Ca_27163_v3 Cicer arietinum L. HOM05D004529 ORTHO05D005884 5.3e-22 110.5 346 28.3
Lalb_Chr22g0354001 Lupinus albus HOM05D004529 ORTHO05D005884 5.3e-22 110.5 219 33.8
Sabra19G0134300 Salix brachista HOM05D004529 ORTHO05D005884 5.3e-22 110.5 191 37.2
Sopen03g029340 Solanum pennellii HOM05D004529 ORTHO05D005884 6.9e-22 110.2 368 25.3
Sabra19G0119700 Salix brachista HOM05D004529 ORTHO05D005884 9.0e-22 109.8 191 37.2
CAN.G65.75 Capsicum annuum HOM05D004529 ORTHO05D005884 1.5e-21 109.0 224 33.9
Medtr6g077930 Medicago truncatula HOM05D004529 ORTHO05D005884 1.5e-21 109.0 360 30.3
CDE05G3012 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 2.0e-21 108.6 226 33.6
COL.COLO4_08720 Corchorus olitorius HOM05D004529 ORTHO05D005884 2.0e-21 108.6 162 40.7
Potri.019G119100 Populus trichocarpa HOM05D004529 ORTHO05D005884 2.6e-21 108.2 191 37.2
MELO3C002172.2 Cucumis melo HOM05D004529 ORTHO05D005884 3.4e-21 107.8 240 32.9
FvH4_5g18430 Fragaria vesca HOM05D004529 ORTHO05D005884 4.5e-21 107.5 300 30.3
FAN18G1654 Fragaria x ananassa HOM05D004529 ORTHO05D005884 4.5e-21 107.5 300 30.3
Peaxi162Scf00643g00541 Petunia axillaris HOM05D004529 ORTHO05D005884 7.6e-21 106.7 125 45.6
Sabra19G0134100 Salix brachista HOM05D004529 ORTHO05D005884 7.6e-21 106.7 191 37.2
Dinv02572 Davidia involucrata HOM05D004529 ORTHO05D005884 1.3e-20 105.9 242 33.9
HPP92_022512 Vanilla planifolia HOM05D004529 ORTHO05D001371 1.3e-20 105.9 229 34.5
Lj2g0011080 Lotus japonicus HOM05D004529 ORTHO05D005884 1.7e-20 105.5 215 34.4
Lalb_Chr14g0370211 Lupinus albus HOM05D004529 ORTHO05D005884 1.7e-20 105.5 359 28.7
Zm00001eb271850 Zea mays HOM05D004529 ORTHO05D005884 2.9e-20 104.8 209 34.9
Sabra19G0119900 Salix brachista HOM05D004529 ORTHO05D005884 3.8e-20 104.4 191 36.1
CDE02G2928 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 5.0e-20 104.0 283 31.8
DCAR_011683 Daucus carota HOM05D004529 ORTHO05D005884 5.0e-20 104.0 307 28.3
PSO063G4972 Papaver somniferum HOM05D004529 ORTHO05D005884 5.0e-20 104.0 337 27.0
FAN08G1550 Fragaria x ananassa HOM05D004529 ORTHO05D005884 8.4e-20 103.2 389 26.7
Gohir.D13G093200 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.1e-19 102.8 367 29.2
PSO782G2500 Papaver somniferum HOM05D004529 ORTHO05D005884 1.4e-19 102.4 329 25.8
Os06g0729500 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 5.5e-19 100.5 466 26.2
Cpa.g.sc168.9 Carica papaya HOM05D004529 ORTHO05D005884 1.6e-18 99.0 334 28.7
Sopen06g028600 Solanum pennellii HOM05D004529 ORTHO05D005884 1.0e-17 96.3 234 31.6
Sopen06g028620 Solanum pennellii HOM05D004529 ORTHO05D005884 1.8e-17 95.5 210 31.9
GSVIVG01029323001 Vitis vinifera HOM05D004529 ORTHO05D005884 1.1e-16 92.8 306 27.8
RcHm_v2.0_Chr1g0318131 Rosa chinensis HOM05D004529 ORTHO05D005884 1.5e-16 92.4 236 30.5
Zm00001eb198730 Zea mays HOM05D004529 ORTHO05D005884 1.9e-16 92.0 194 33.0
Phvul.004G138800 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 3.7e-15 87.8 234 29.1
PGSC0003DMG400045819 Solanum tuberosum HOM05D004529 ORTHO05D005884 3.1e-14 84.7 190 31.1
Nitab4.5_0011808g0010 Nicotiana tabacum HOM05D004529 ORTHO05D005884 4.5e-13 80.9 87 47.1
FAN04G0338 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.5e-11 75.1 207 30.0
Ciclev10018263m.g Citrus clementina HOM05D004529 ORTHO05D005884 5.5e-11 73.9 343 24.2
Mapoly0005s0070 Marchantia polymorpha HOM05D004529 ORTHO05D000444 1.6e-10 72.4 236 27.1
TPR.G19877 Trifolium pratense HOM05D004529 ORTHO05D005884 2.1e-10 72.0 144 33.3
Cfa014501 Carpinus fangiana HOM05D004529 ORTHO05D005884 1.5e-08 65.9 113 34.5


User provided reference genes

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