Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 3.4e-40 168.7 149 100.0
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 8.7e-12 74.3 75 57.3
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.1e-11 73.9 88 54.5
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.5e-11 73.6 73 56.2
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.5e-11 73.6 73 56.2
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 1.5e-11 73.6 58 62.1
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 2.5e-11 72.8 51 68.6
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 3.3e-11 72.4 75 58.7
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 4.3e-11 72.0 58 67.2
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 5.6e-11 71.6 78 55.1
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 5.6e-11 71.6 58 65.5
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 5.6e-11 71.6 60 65.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 7.4e-11 71.2 58 65.5
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 7.4e-11 71.2 73 54.8
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 9.6e-11 70.9 73 54.8
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 9.6e-11 70.9 58 65.5
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 1.3e-10 70.5 58 62.1
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 1.3e-10 70.5 58 63.8
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 1.3e-10 70.5 76 52.6
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.8e-10 69.3 59 57.6
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 3.7e-10 68.9 63 60.3
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 3.7e-10 68.9 63 57.1
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 4.8e-10 68.6 52 61.5
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 4.8e-10 68.6 77 51.9
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 4.8e-10 68.6 81 51.9
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 1.1e-09 67.4 58 62.1
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 1.4e-09 67.0 50 62.0
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 2.4e-09 66.2 58 58.6
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 4.0e-09 65.5 51 64.7
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 4.0e-09 65.5 55 58.2
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 4.0e-09 65.5 50 66.0
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 9.0e-09 64.3 58 58.6
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 9.0e-09 64.3 58 58.6
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 1.2e-08 63.9 65 55.4
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.5e-08 63.5 55 58.2
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 2.0e-08 63.2 51 60.8
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 2.6e-08 62.8 58 60.3
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 2.6e-08 62.8 64 56.2
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 3.4e-08 62.4 51 56.9
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 3.4e-08 62.4 47 59.6
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 4.5e-08 62.0 57 56.1
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 4.5e-08 62.0 83 45.8
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 4.5e-08 62.0 53 58.5
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 4.5e-08 62.0 58 55.2
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 4.5e-08 62.0 44 65.9
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 5.8e-08 61.6 81 48.1
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 7.6e-08 61.2 79 54.4
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.6e-08 61.2 77 48.1
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 9.9e-08 60.8 76 50.0
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 9.9e-08 60.8 48 56.2
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 1.7e-07 60.1 53 62.3
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.7e-07 60.1 76 47.4
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.7e-07 60.1 69 47.8
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 2.2e-07 59.7 60 55.0
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 2.9e-07 59.3 53 60.4
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 2.9e-07 59.3 53 60.4
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 2.9e-07 59.3 53 60.4
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 2.9e-07 59.3 53 60.4
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 2.9e-07 59.3 63 49.2
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 2.9e-07 59.3 59 57.6
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.9e-07 59.3 51 58.8
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 2.9e-07 59.3 51 58.8
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 4.9e-07 58.5 62 58.1
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 6.4e-07 58.2 75 48.0
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 6.4e-07 58.2 55 61.8
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 8.4e-07 57.8 62 50.0
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 8.4e-07 57.8 69 52.2
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 1.4e-06 57.0 62 56.5
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 1.4e-06 57.0 53 56.6
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 1.9e-06 56.6 53 58.5
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 3.2e-06 55.8 52 59.6
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 3.2e-06 55.8 50 62.0
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 7.1e-06 54.7 59 54.2
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 9.3e-06 54.3 88 43.2
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 9.3e-06 54.3 48 62.5


User provided reference genes

Program Settings