Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 2.9e-146 521.9 276 100.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.5e-49 200.7 284 43.3
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.3e-49 199.5 277 43.0
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.4e-47 194.1 282 44.0
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.9e-44 183.7 287 36.2
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.6e-43 179.5 272 40.1
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 1.8e-42 177.2 255 42.0
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 5.1e-42 175.6 288 37.5
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 1.1e-41 174.5 287 41.1
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 3.3e-41 172.9 249 41.4
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 5.7e-41 172.2 290 37.9
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.7e-40 170.6 278 42.1
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 3.7e-40 169.5 254 40.9
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 1.4e-39 167.5 235 41.3
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 5.3e-39 165.6 268 42.5
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 9.1e-39 164.9 226 41.2
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 1.5e-38 164.1 273 36.3
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 7.7e-38 161.8 306 35.9
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.7e-37 160.6 268 36.9
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 6.5e-37 158.7 264 39.4
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 2.5e-36 156.8 289 37.4
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 2.5e-36 156.8 220 41.8
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 5.5e-36 155.6 241 39.8
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 5.5e-36 155.6 258 39.1
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 2.7e-35 153.3 278 38.1
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.0e-34 151.4 261 42.1
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 3.9e-34 149.4 280 35.4
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 6.7e-34 148.7 255 40.4
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 8.8e-34 148.3 257 33.5
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 2.6e-33 146.7 274 37.2
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 5.7e-33 145.6 260 37.7
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 5.7e-33 145.6 232 38.8
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.7e-33 145.6 231 38.5
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 5.7e-33 145.6 232 38.8
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 5.7e-33 145.6 239 38.5
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 7.4e-33 145.2 260 37.3
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 7.4e-33 145.2 275 36.4
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 9.7e-33 144.8 238 37.4
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 2.8e-32 143.3 271 34.3
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 8.2e-32 141.7 265 35.1
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.1e-31 141.4 251 35.5
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.4e-31 141.0 238 36.6
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.4e-31 141.0 225 40.4
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 9.1e-31 138.3 272 37.1
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 9.1e-31 138.3 228 35.5
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.6e-30 136.7 272 37.1
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 3.5e-30 136.3 268 34.3
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 3.5e-30 136.3 259 34.7
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 4.5e-30 136.0 227 35.7
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 1.7e-29 134.0 227 36.1
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 5.0e-29 132.5 264 35.2
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 5.0e-29 132.5 195 40.5
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 1.4e-28 131.0 230 36.5
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.9e-28 130.6 227 35.7
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.5e-28 130.2 174 41.4
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 3.2e-28 129.8 246 33.3
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 4.2e-28 129.4 236 34.7
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 4.2e-28 129.4 229 37.1
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 7.2e-28 128.6 286 29.4
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 9.4e-28 128.3 272 37.1
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 1.2e-27 127.9 228 35.1
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 4.7e-27 125.9 247 36.4
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 8.0e-27 125.2 229 36.2
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 8.0e-27 125.2 236 33.5
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.4e-26 124.4 229 33.2
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 2.3e-26 123.6 227 33.5
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 2.3e-26 123.6 227 33.5
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 5.2e-26 122.5 231 37.7
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 5.2e-26 122.5 200 37.5
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 5.2e-26 122.5 201 36.3
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 1.5e-25 120.9 293 30.4
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 2.0e-25 120.6 243 35.0
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 5.7e-25 119.0 262 33.2
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 9.7e-25 118.2 270 34.4
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 5.3e-23 112.5 282 32.6
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 2.9e-21 106.7 208 36.1
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 5.0e-21 105.9 246 29.7
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 6.5e-21 105.5 170 41.8
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 3.3e-17 93.2 145 37.9
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 7.5e-17 92.0 178 31.5
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.3e-16 91.3 196 33.7
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 7.7e-14 82.0 144 34.7
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 5.0e-13 79.3 133 36.8
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 5.0e-13 79.3 232 24.6
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 7.2e-12 75.5 154 33.8
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 9.4e-12 75.1 290 28.3
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.6e-11 74.3 112 36.6
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 2.0e-09 67.4 231 23.8
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 3.4e-09 66.6 121 32.2


User provided reference genes

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