Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 8.9e-90 334.0 186 100.0
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.2e-32 143.3 120 67.5
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 3.8e-32 142.5 165 53.3
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 2.5e-31 139.8 151 55.6
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.1e-30 136.7 159 56.6
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 2.1e-30 136.7 157 52.2
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.8e-29 133.7 165 49.7
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.8e-29 133.7 151 53.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 2.3e-29 133.3 164 52.4
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 3.9e-29 132.5 145 57.9
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 4.3e-28 129.0 160 50.0
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 5.7e-28 128.6 171 48.0
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.7e-28 128.6 160 55.6
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 7.4e-28 128.3 171 47.4
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 9.6e-28 127.9 158 52.5
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 9.6e-28 127.9 159 54.1
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 9.6e-28 127.9 169 46.7
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 9.6e-28 127.9 175 46.3
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.3e-27 127.5 158 53.2
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.6e-27 127.1 160 50.6
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.8e-27 126.3 146 56.2
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 3.7e-27 125.9 191 45.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.7e-27 125.9 158 53.8
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.7e-27 125.9 171 47.4
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 6.3e-27 125.2 120 60.8
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 8.2e-27 124.8 154 49.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.1e-26 124.4 151 52.3
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-26 124.4 171 46.8
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 2.4e-26 123.2 162 53.7
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.4e-26 123.2 158 50.6
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-26 123.2 160 51.9
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 3.1e-26 122.9 164 47.6
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 3.1e-26 122.9 168 48.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 5.3e-26 122.1 153 54.2
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 6.9e-26 121.7 164 47.6
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.2e-25 120.9 165 49.1
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.5e-25 120.6 152 53.3
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.5e-25 120.6 155 52.3
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 2.6e-25 119.8 147 52.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.6e-25 119.8 156 51.3
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 1.0e-24 117.9 173 47.4
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.0e-24 117.9 149 48.3
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.0e-24 117.9 164 44.5
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.0e-24 117.9 145 49.7
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.7e-24 117.1 164 49.4
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.8e-24 115.9 164 43.9
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 5.0e-24 115.5 147 50.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.5e-24 115.2 157 49.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.1e-23 114.4 152 50.7
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.1e-23 114.4 160 43.8
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.4e-23 114.0 158 49.4
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.9e-23 113.6 146 50.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.5e-23 113.2 180 46.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.5e-23 113.2 153 45.8
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.5e-23 113.2 145 51.7
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.2e-23 112.8 159 48.4
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.2e-23 112.8 159 45.9
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.2e-23 112.5 162 47.5
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 4.2e-23 112.5 166 47.6
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 4.2e-23 112.5 163 49.7
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.2e-22 110.9 164 45.1
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 3.6e-22 109.4 128 53.9
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.8e-21 107.1 165 43.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.0e-21 106.3 148 49.3
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 3.9e-21 105.9 146 51.4
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.9e-21 105.9 136 54.4
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 3.9e-21 105.9 146 48.6
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 5.1e-21 105.5 163 47.9
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 6.7e-21 105.1 151 47.0
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 8.7e-21 104.8 161 45.3
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.1e-20 104.4 115 53.9
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-20 104.4 120 53.3
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 3.3e-20 102.8 182 42.3
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 4.3e-20 102.4 163 42.9
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.3e-19 100.9 180 38.9
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.3e-19 100.9 160 46.9
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.2e-19 100.1 161 44.7
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.8e-19 99.0 144 46.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 4.8e-19 99.0 220 36.8
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 6.3e-19 98.6 119 51.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.1e-18 97.8 157 42.0
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.4e-18 97.4 199 38.2
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.4e-18 97.4 148 46.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 4.1e-18 95.9 113 54.9
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.2e-17 94.4 144 41.0
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-17 94.0 186 40.3
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 4.5e-17 92.4 137 51.1
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 5.9e-17 92.0 201 36.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.0e-16 91.3 161 40.4
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.0e-16 91.3 146 44.5
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.3e-16 90.9 99 55.6
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.3e-16 90.9 154 40.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.7e-16 90.5 187 39.0
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.2e-16 90.1 142 43.0
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 3.8e-16 89.4 100 55.0
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 5.0e-16 89.0 150 42.7
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 5.0e-16 89.0 143 43.4
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 6.5e-16 88.6 151 43.7
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.1e-15 87.8 159 39.6
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-15 87.4 155 39.4
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.4e-15 87.4 162 40.1
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.9e-15 87.0 141 44.7
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 2.5e-15 86.7 177 33.9
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.2e-15 86.3 191 38.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.2e-15 86.3 192 36.5
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 5.5e-15 85.5 178 37.1
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 7.2e-15 85.1 164 37.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.1e-14 83.6 135 45.2
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-14 82.8 175 36.6
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 3.6e-14 82.8 146 39.0
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 4.6e-14 82.4 100 52.0
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 7.9e-14 81.6 195 35.9
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 7.9e-14 81.6 124 49.2
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 3.9e-13 79.3 122 44.3
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 3.9e-13 79.3 122 44.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 5.1e-13 79.0 198 34.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.1e-12 77.8 175 36.0
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 2.0e-12 77.0 145 43.4
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-12 76.6 121 43.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.6e-12 76.6 142 44.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 2.6e-12 76.6 101 48.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 4.4e-12 75.9 155 38.1
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 7.4e-12 75.1 131 44.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.8e-11 73.2 145 40.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 3.7e-11 72.8 168 35.1
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-10 70.1 126 43.7
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.4e-10 70.1 189 35.4
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.1e-10 69.3 75 56.0
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 6.9e-10 68.6 118 47.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 9.1e-10 68.2 152 36.2
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.6e-09 66.6 172 34.9
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.6e-09 66.6 172 34.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.5e-09 65.9 142 34.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 4.5e-09 65.9 176 35.8
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 5.9e-09 65.5 128 44.5
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-08 64.7 183 33.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.9e-08 63.2 147 39.5
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 6.5e-08 62.0 189 30.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 9.4e-07 58.2 73 52.1
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-06 57.8 87 43.7
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.6e-06 57.4 75 53.3


User provided reference genes

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