Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0000880 Simmondsia chinensis HOM05D007219 ORTHO05D008995 2.5e-68 261.9 127 100.0
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 2.0e-49 199.1 111 84.7
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 1.3e-48 196.4 111 81.1
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 4.9e-48 194.5 110 80.0
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 1.1e-47 193.4 110 81.8
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 1.4e-47 193.0 110 80.0
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 2.4e-47 192.2 111 79.3
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 3.2e-47 191.8 108 80.6
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 3.2e-47 191.8 110 79.1
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 5.4e-47 191.0 110 78.2
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 9.3e-47 190.3 110 76.4
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 2.1e-46 189.1 110 79.1
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 4.6e-46 188.0 111 79.3
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 4.6e-46 188.0 112 76.8
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 6.0e-46 187.6 111 77.5
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 6.0e-46 187.6 111 77.5
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 6.0e-46 187.6 110 77.3
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 7.8e-46 187.2 112 75.9
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 7.8e-46 187.2 113 76.1
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 1.0e-45 186.8 111 78.4
AUR62017530 Chenopodium quinoa HOM05D007219 ORTHO05D008995 1.3e-45 186.4 134 67.2
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.3e-45 186.4 110 75.5
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 1.3e-45 186.4 110 77.3
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 1.7e-45 186.0 110 75.5
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 2.3e-45 185.7 113 76.1
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 2.3e-45 185.7 110 77.3
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 3.0e-45 185.3 111 78.4
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 3.0e-45 185.3 110 76.4
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 5.1e-45 184.5 110 79.1
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 6.6e-45 184.1 109 78.0
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 8.7e-45 183.7 109 76.1
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 1.5e-44 183.0 109 75.2
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 1.5e-44 183.0 111 73.9
SGA_v2.0_scaffold73G24522 Striga asiatica HOM05D007219 ORTHO05D008995 1.5e-44 183.0 110 75.5
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 1.9e-44 182.6 112 73.2
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 1.9e-44 182.6 109 78.9
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 3.3e-44 181.8 111 75.7
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 3.3e-44 181.8 110 75.5
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 3.3e-44 181.8 110 74.5
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 4.3e-44 181.4 110 76.4
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 4.3e-44 181.4 110 72.7
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 7.3e-44 180.6 110 72.7
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 7.3e-44 180.6 110 71.8
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 7.3e-44 180.6 110 77.3
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 7.3e-44 180.6 110 70.9
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 7.3e-44 180.6 108 75.9
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 9.6e-44 180.3 111 75.7
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 9.6e-44 180.3 110 74.5
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 1.6e-43 179.5 110 75.5
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 1.6e-43 179.5 110 70.9
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 1.6e-43 179.5 111 73.9
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 1.6e-43 179.5 110 73.6
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 2.1e-43 179.1 109 73.4
MELO3C024213.2 Cucumis melo HOM05D007219 ORTHO05D008995 2.8e-43 178.7 111 73.9
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 2.8e-43 178.7 110 73.6
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 4.8e-43 177.9 111 72.1
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 8.1e-43 177.2 110 72.7
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 1.1e-42 176.8 110 72.7
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.4e-42 176.4 110 70.9
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 1.4e-42 176.4 110 69.1
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 1.4e-42 176.4 110 72.7
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 1.4e-42 176.4 109 74.3
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 1.4e-42 176.4 110 71.8
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 3.1e-42 175.3 109 71.6
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 4.0e-42 174.9 111 73.9
arahy.Tifrunner.gnm1.ann1.E78GDQ Arachis hypogaea HOM05D007219 ORTHO05D008995 6.9e-42 174.1 109 73.4
arahy.Tifrunner.gnm1.ann1.XZ9N91 Arachis hypogaea HOM05D007219 ORTHO05D008995 6.9e-42 174.1 109 73.4
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 9.0e-42 173.7 110 69.1
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 1.2e-41 173.3 110 73.6
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 1.5e-41 172.9 132 62.9
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 2.0e-41 172.6 110 72.7
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 2.6e-41 172.2 110 72.7
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 2.6e-41 172.2 110 72.7
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 4.5e-41 171.4 110 69.1
Cfa014252 Carpinus fangiana HOM05D007219 ORTHO05D008995 1.3e-40 169.9 135 60.7
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 1.3e-40 169.9 111 71.2
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 1.3e-40 169.9 110 73.6
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 4.9e-40 167.9 110 70.0
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 1.1e-39 166.8 108 70.4
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 5.4e-39 164.5 108 69.4
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 2.7e-38 162.2 106 69.8
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 7.9e-38 160.6 97 76.3
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 3.0e-37 158.7 97 75.3
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 6.4e-32 141.0 111 62.2
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 2.4e-31 139.0 86 76.7
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 4.2e-31 138.3 107 57.0
FAN02G0754 Fragaria x ananassa HOM05D007219 ORTHO05D008995 2.1e-30 136.0 89 66.3
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 4.6e-30 134.8 109 59.6
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 6.0e-30 134.4 105 57.1
SEGI_01956 Sequoiadendron giganteum HOM05D007219 ORTHO05D008995 2.8e-27 125.6 85 63.5
MD17G1111700 Malus domestica HOM05D007219 ORTHO05D008995 1.8e-26 122.9 109 56.0
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 7.9e-22 107.5 106 49.1
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 2.8e-19 99.0 64 75.0
VMungo0540G0477 Vigna mungo HOM05D007219 ORTHO05D008995 8.2e-19 97.4 55 78.2
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 1.5e-17 93.2 53 81.1
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 2.0e-17 92.8 52 80.8
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 7.2e-15 84.3 73 52.1
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 7.2e-15 84.3 54 75.9
Actinidia09773 Actinidia chinensis HOM05D007219 ORTHO05D008995 5.1e-13 78.2 55 69.1
Rhsim06G0172900 Rhododendron simsii HOM05D007219 ORTHO05D008995 6.3e-11 71.2 84 48.8
CSS0030489 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 3.8e-08 62.0 42 61.9
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 5.5e-07 58.2 106 37.7
CSS0021882 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.6e-06 55.5 34 70.6
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 3.6e-06 55.5 29 86.2


User provided reference genes

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