Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1354.3 695 100.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1111.7 695 81.0
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1108.6 694 81.7
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1106.3 696 81.5
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1093.6 696 79.6
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1089.7 696 79.5
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1087.4 696 78.7
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1082.4 696 79.2
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 4.8e-312 1074.7 726 75.9
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 4.8e-312 1073.9 697 78.9
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.9e-311 1072.0 699 77.8
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 1.9e-311 1072.0 696 78.2
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 4.3e-311 1070.8 698 78.5
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 699 77.7
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 3.6e-310 1067.8 691 79.2
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 3.6e-310 1067.8 692 78.3
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.4e-309 1065.8 695 78.6
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 8.9e-309 1063.1 741 75.2
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 2.0e-308 1062.0 691 78.4
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.4e-308 1061.2 696 77.3
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 1.3e-307 1059.3 697 78.3
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 1.7e-307 1058.9 692 78.3
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 699 77.4
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 6.3e-307 1057.0 693 78.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 3.2e-306 1054.7 695 78.0
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 692 77.9
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 694 77.2
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 691 77.4
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 698 76.9
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 5.9e-305 1050.4 697 76.5
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 7.8e-305 1050.0 693 77.3
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.3e-304 1049.3 693 76.8
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.7e-304 1048.9 694 77.7
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 2.3e-304 1048.5 693 76.8
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 5.0e-304 1047.3 694 77.1
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 4.3e-303 1044.3 697 77.5
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 4.7e-302 1040.8 691 76.7
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 8.0e-302 1040.0 692 77.2
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 1.4e-301 1039.3 696 76.1
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.4e-301 1039.3 693 76.6
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 2.3e-301 1038.5 690 76.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 5.2e-301 1037.3 695 76.3
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 6.8e-301 1036.9 693 76.0
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 6.8e-301 1036.9 691 76.6
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 697 76.9
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 3.4e-300 1034.6 676 77.8
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 7.5e-300 1033.5 730 73.2
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 7.5e-300 1033.5 692 76.7
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.4e-298 1027.3 690 75.9
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 7.0e-298 1026.9 694 76.8
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.2e-297 1026.2 693 75.3
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 3.5e-297 1024.6 691 75.7
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 6.0e-297 1023.8 737 72.6
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.0e-296 1023.1 690 75.7
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.7e-296 1022.3 697 76.0
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 5.0e-296 1020.8 710 75.2
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 4.4e-292 1007.7 695 75.1
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.1e-290 1003.0 699 73.8
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 7.1e-290 1000.3 803 67.0
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 3.5e-289 998.0 691 74.5
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 4.6e-289 997.7 695 74.0
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 6.0e-289 997.3 699 74.2
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 6.0e-289 997.3 696 73.1
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.3e-288 996.1 694 74.1
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.9e-287 992.3 694 73.9
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 2.5e-287 991.9 696 73.1
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 5.6e-287 990.7 649 77.3
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 9.5e-287 989.9 691 73.8
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 2.8e-286 988.4 694 73.3
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.6e-286 988.0 691 73.8
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.8e-285 985.7 694 73.6
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 2.6e-284 981.9 696 73.9
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 7.6e-284 980.3 695 73.8
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 1.7e-283 979.2 695 73.7
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 2.9e-283 978.4 695 73.7
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 2.9e-283 978.4 695 73.7
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 6.4e-283 977.2 694 72.9
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.1e-282 976.5 693 73.7
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 4.1e-282 974.5 694 71.8
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.7e-281 971.8 696 72.1
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.0e-280 969.9 695 71.9
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 7.3e-279 963.8 695 72.9
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.6e-276 955.3 695 71.9
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.8e-270 935.3 693 71.6
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 2.0e-268 929.1 700 68.9
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.1e-266 923.3 554 85.2
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 6.0e-257 891.0 691 67.6
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 8.7e-256 887.1 1200 45.7
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 2.1e-241 839.3 716 61.7
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 1.9e-239 832.8 768 60.3
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.9e-239 832.8 580 74.5
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.8e-232 809.7 536 77.8
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.4e-229 799.3 724 57.0
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 2.2e-219 766.1 510 76.1
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.6e-217 760.0 468 81.2
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 2.3e-208 729.6 698 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 4.0e-208 728.8 642 58.6
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 3.5e-204 715.7 520 69.8
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 6.6e-187 658.3 418 78.7
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 7.1e-141 505.4 719 41.4
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 2.4e-136 490.3 712 41.6
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 1.1e-128 464.9 721 38.8
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 3.4e-127 459.9 697 44.5
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 6.7e-123 445.7 268 85.1
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.2e-121 440.7 691 43.1
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.9e-117 427.6 273 80.2
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 7.7e-111 405.6 476 48.3
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.2e-109 399.1 658 42.4
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.8e-107 394.4 232 83.6
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 7.7e-95 352.4 427 51.1
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 8.0e-92 342.4 680 36.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 2.2e-86 324.3 249 66.7
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 2.9e-78 297.4 298 58.7
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 8.0e-76 289.3 203 78.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 6.4e-73 279.6 224 64.3
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 4.6e-63 246.9 167 71.3
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 4.1e-48 197.2 138 75.4
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 4.1e-48 197.2 138 75.4
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 2.9e-41 174.5 100 83.0
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 7.1e-40 169.9 122 74.6
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 4.0e-27 127.5 121 54.5
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.1e-21 109.4 84 61.9
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.1e-20 105.1 206 35.9
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.0e-17 96.3 75 66.7
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 2.9e-17 94.7 64 79.7
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 6.7e-14 83.6 154 35.1


User provided reference genes

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