Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 0.0e+00 2603.5 1329 100.0
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 2.1e-64 252.3 1372 27.8
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.1e-57 229.9 1374 26.2
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 6.1e-56 224.2 1444 26.0
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 3.3e-54 218.4 1422 25.8
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 4.3e-54 218.0 1549 25.3
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 2.9e-50 205.3 1561 25.8
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 5.0e-50 204.5 1524 25.3
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 6.5e-50 204.1 1481 25.7
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 8.5e-50 203.8 1435 26.5
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 7.2e-49 200.7 1418 25.3
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 2.1e-48 199.1 1435 26.3
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 2.7e-48 198.7 1520 24.5
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.9e-47 194.9 189 58.7
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.7e-47 194.1 1454 26.0
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 4.4e-46 191.4 1460 24.1
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 4.4e-46 191.4 1408 25.7
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 1.7e-45 189.5 1425 27.1
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.1e-44 186.8 1453 25.7
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 5.3e-44 184.5 1401 25.5
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 2.6e-43 182.2 1392 25.6
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 4.5e-43 181.4 1345 25.4
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.9e-41 176.0 1344 25.8
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 1.9e-41 176.0 740 30.0
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.2e-40 173.3 1245 24.9
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.8e-39 169.5 602 33.6
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 2.0e-38 166.0 1381 24.0
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 4.4e-38 164.9 1395 24.2
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 2.8e-37 162.2 1505 23.8
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 3.7e-37 161.8 486 34.0
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.8e-36 159.5 1423 23.8
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 7.7e-35 154.1 1406 25.2
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.0e-34 153.7 1390 24.3
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 1.7e-34 152.9 1373 25.2
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 3.8e-34 151.8 1313 24.7
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 6.5e-34 151.0 1527 24.0
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.6e-32 146.4 1455 24.3
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 2.7e-32 145.6 1389 24.1
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 8.0e-32 144.1 1406 23.7
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 1.8e-31 142.9 823 27.0
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 3.0e-31 142.1 1409 23.7
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 5.2e-31 141.4 1461 23.9
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 6.7e-31 141.0 1321 24.9
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 8.8e-31 140.6 1458 24.6
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.5e-30 139.8 1414 24.5
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 3.3e-30 138.7 1402 24.9
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 1.3e-29 136.7 622 29.6
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 1.3e-29 136.7 1419 24.5
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 2.2e-29 136.0 187 49.2
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 2.2e-29 136.0 1316 25.6
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 9.1e-28 130.6 1392 23.5
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.2e-27 130.2 1327 23.3
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 1.2e-27 130.2 94 66.0
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.7e-27 129.0 1091 25.8
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 1.0e-26 127.1 85 68.2
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.0e-26 127.1 1441 22.8
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 1.3e-26 126.7 1433 23.6
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 6.5e-26 124.4 1308 24.1
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 8.5e-26 124.0 79 77.2
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 1.1e-25 123.6 1400 24.1
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.5e-25 123.2 504 28.8
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 3.2e-25 122.1 1377 24.1
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 3.2e-25 122.1 698 28.4
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 4.2e-25 121.7 90 63.3
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 9.4e-25 120.6 90 63.3
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 1.6e-24 119.8 1393 23.0
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.6e-24 119.8 1320 24.7
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 1.6e-24 119.8 90 63.3
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 4.7e-24 118.2 482 30.9
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 4.7e-24 118.2 606 29.5
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.7e-24 118.2 175 46.3
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 6.1e-24 117.9 695 28.3
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 1.4e-23 116.7 422 30.3
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 2.3e-23 115.9 243 39.5
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.0e-23 115.2 504 30.2
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 8.8e-23 114.0 225 39.1
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.2e-22 113.6 132 50.8
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 2.6e-22 112.5 66 78.8
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 5.7e-22 111.3 91 60.4
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 9.8e-22 110.5 68 76.5
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.3e-21 110.2 64 78.1
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 6.3e-21 107.8 82 65.9
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 8.3e-21 107.5 206 39.3
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 8.3e-21 107.5 176 41.5
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 8.3e-21 107.5 158 46.2
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.8e-20 106.3 383 32.1
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 3.1e-20 105.5 177 42.4
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 4.1e-20 105.1 127 48.0
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 1.2e-19 103.6 180 38.9
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 7.7e-19 100.9 124 46.8
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 5.0e-18 98.2 100 53.0
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 6.5e-18 97.8 1591 23.2
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 1.1e-17 97.1 64 68.8
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.5e-17 96.7 325 30.8
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 3.2e-17 95.5 486 29.4
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 4.2e-17 95.1 369 29.3
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 2.8e-16 92.4 261 36.4
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 6.1e-16 91.3 76 56.6
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.0e-15 90.5 141 43.3
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 1.0e-15 90.5 76 56.6
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.4e-15 90.1 116 44.0
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 4.0e-15 88.6 403 31.3
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-14 85.1 217 34.6
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 8.3e-13 80.9 63 63.5
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 4.1e-12 78.6 78 48.7
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 1.2e-11 77.0 127 42.5
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 1.2e-11 77.0 116 43.1
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 2.0e-11 76.3 413 27.8
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 4.5e-11 75.1 218 34.9
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 1.0e-10 73.9 183 35.0
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 3.8e-10 72.0 524 26.5
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 2.5e-09 69.3 199 30.7
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 3.3e-09 68.9 179 35.8
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.6e-08 66.6 392 28.1
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 2.1e-08 66.2 532 25.2
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.8e-08 65.9 449 24.3
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 3.6e-08 65.5 526 26.0
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 4.7e-08 65.1 132 39.4
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 4.7e-08 65.1 438 24.7
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 6.1e-08 64.7 444 27.5
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 1.4e-07 63.5 402 27.9
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 1.8e-07 63.2 554 25.8
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 4.0e-07 62.0 438 24.9
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.2e-07 61.6 444 25.5
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 6.8e-07 61.2 102 40.2
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 6.8e-07 61.2 98 42.9
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 8.9e-07 60.8 211 30.8
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.2e-06 60.5 474 25.1
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 1.2e-06 60.5 70 48.6
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 1.5e-06 60.1 115 38.3
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.5e-06 60.1 118 39.0
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.0e-06 59.7 383 27.2
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 2.0e-06 59.7 448 25.7
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.6e-06 59.3 408 24.8
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 2.6e-06 59.3 539 25.6
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 3.4e-06 58.9 480 26.5
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 3.4e-06 58.9 448 25.7
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.7e-06 58.2 357 26.9
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 5.7e-06 58.2 541 27.0
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 5.7e-06 58.2 357 26.9
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 5.7e-06 58.2 599 24.4
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 7.5e-06 57.8 129 38.0
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 9.8e-06 57.4 465 24.7


User provided reference genes

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