Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.3e-137 493.0 246 100.0
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.3e-137 493.0 246 100.0
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.0e-49 201.1 250 46.8
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 3.9e-49 199.1 248 48.0
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 2.8e-47 193.0 248 47.6
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 3.6e-39 166.0 250 44.4
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 5.8e-37 158.7 251 42.2
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 9.9e-37 157.9 221 43.0
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 9.9e-37 157.9 251 40.6
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 3.8e-36 156.0 217 45.6
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.2e-35 152.9 198 49.5
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 4.1e-35 152.5 201 45.3
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 9.2e-35 151.4 252 43.3
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.1e-32 144.4 240 40.0
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.9e-32 143.7 193 47.2
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 7.3e-32 141.7 246 40.7
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.2e-31 141.0 204 44.6
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.8e-30 137.1 211 40.8
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 5.2e-30 135.6 192 43.8
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 5.2e-30 135.6 196 43.9
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 8.9e-30 134.8 248 38.7
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 2.2e-28 130.2 198 43.4
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.2e-28 130.2 195 44.6
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 8.4e-28 128.3 200 45.5
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.1e-27 127.9 198 42.4
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 4.2e-27 125.9 201 40.3
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 7.1e-27 125.2 199 42.7
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 7.1e-27 125.2 197 40.6
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.3e-27 124.8 258 37.2
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 9.3e-27 124.8 199 42.7
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 4.6e-26 122.5 222 37.4
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 6.0e-26 122.1 234 36.8
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.0e-25 121.3 200 42.0
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.7e-25 120.6 197 42.1
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.3e-25 120.2 234 38.5
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 3.0e-25 119.8 234 38.0
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.1e-25 119.0 205 40.0
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 5.1e-25 119.0 205 40.0
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 5.1e-25 119.0 220 39.1
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 6.6e-25 118.6 196 40.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 8.7e-25 118.2 200 38.5
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.5e-24 117.5 195 40.0
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.5e-24 117.5 200 40.0
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.5e-24 117.5 193 40.4
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 3.3e-24 116.3 243 38.3
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 4.3e-24 115.9 202 40.6
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 7.3e-24 115.2 195 40.0
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 1.6e-23 114.0 195 37.9
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 2.8e-23 113.2 255 37.3
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 3.6e-23 112.8 191 39.3
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 4.8e-23 112.5 234 38.0
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 8.1e-23 111.7 237 36.7
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 2.4e-22 110.2 192 41.1
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.4e-22 110.2 199 38.2
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.4e-22 110.2 196 36.7
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 5.3e-22 109.0 199 38.2
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.0e-21 107.1 202 37.6
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 2.0e-21 107.1 193 39.9
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 3.4e-21 106.3 202 37.1
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 4.5e-21 105.9 204 37.7
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 2.9e-20 103.2 207 38.2
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 2.9e-20 103.2 194 38.1
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 6.4e-20 102.1 194 38.1
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 8.4e-20 101.7 198 37.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 1.1e-19 101.3 201 38.3
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.6e-18 95.9 252 31.7
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 2.3e-17 93.6 172 39.0
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.1e-16 91.3 220 30.9
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 1.3e-15 87.8 198 36.4
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.1e-15 87.0 136 39.0
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 2.1e-15 87.0 201 33.8
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 2.1e-15 87.0 210 32.9
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.1e-15 87.0 188 33.5
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 6.2e-15 85.5 248 29.8
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 3.1e-14 83.2 199 31.7
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 5.3e-14 82.4 201 37.3
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.2e-13 81.3 186 35.5
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.5e-13 80.9 185 34.6
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.2e-12 77.0 164 33.5
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.9e-12 76.6 138 39.1
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.4e-11 74.3 208 30.3
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.9e-11 73.9 197 32.5
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 7.1e-11 72.0 101 42.6
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 7.1e-11 72.0 162 32.1
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 2.1e-10 70.5 150 36.0
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 2.7e-10 70.1 201 30.8
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 4.6e-10 69.3 161 32.9
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 1.3e-09 67.8 206 31.6
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 3.0e-09 66.6 199 30.7
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.1e-09 65.9 255 29.0
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 3.3e-08 63.2 206 31.6
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 1.6e-07 60.8 200 34.5
ECA247G1060 Erigeron canadensis HOM05D051946 ORTHO05D008965 1.6e-07 60.8 135 31.9
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 2.1e-07 60.5 127 37.8
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.4e-06 57.8 208 29.8
Migut.L02048 Erythranthe guttata HOM05D007287 ORTHO05D008965 3.1e-06 56.6 156 35.9
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.3e-06 55.8 197 28.4
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 6.9e-06 55.5 258 27.5
Hund31494 Selenicereus undatus HOM05D052263 ORTHO05D050917 9.0e-06 55.1 120 35.8
Hund31495 Selenicereus undatus HOM05D052263 ORTHO05D050917 9.0e-06 55.1 120 35.8


User provided reference genes

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