Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.5e-46 189.1 95 100.0
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.3e-16 89.7 60 70.0
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.8e-15 85.9 60 68.3
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.0e-14 82.4 60 68.3
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.0e-14 82.4 60 65.0
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 5.9e-14 80.9 60 63.3
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.8e-13 78.2 60 63.3
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 5.0e-13 77.8 60 61.7
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 6.5e-13 77.4 60 60.0
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 6.5e-13 77.4 60 63.3
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.5e-12 76.3 60 60.0
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.2e-12 74.7 60 61.7
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 7.2e-12 73.9 60 60.0
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 7.2e-12 73.9 60 60.0
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-11 73.2 60 58.3
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.2e-11 73.2 60 61.7
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.6e-11 72.8 57 61.4
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.6e-11 72.8 60 56.7
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 6.1e-11 70.9 60 56.7
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-10 70.1 57 59.6
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-10 70.1 57 59.6
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.4e-10 69.7 57 61.4
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.0e-10 68.6 58 56.9
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 3.0e-10 68.6 57 57.9
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 3.0e-10 68.6 57 57.9
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 3.0e-10 68.6 57 57.9
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 4.0e-10 68.2 59 55.9
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 5.2e-10 67.8 59 55.9
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.8e-10 67.4 57 59.6
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.2e-09 66.6 57 57.9
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.5e-09 66.2 57 57.9
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 2.0e-09 65.9 57 57.9
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.0e-09 65.9 57 57.9
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-09 65.9 57 57.9
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.6e-09 65.5 57 57.9
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 3.4e-09 65.1 58 58.6
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 7.5e-09 63.9 56 57.1
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 9.8e-09 63.5 57 56.1
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 9.8e-09 63.5 57 56.1
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 9.8e-09 63.5 57 57.9
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 9.8e-09 63.5 57 61.4
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.3e-08 63.2 57 54.4
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 56.1
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 56.1
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 56.1
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 56.1
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 56.1
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 56.1
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.7e-08 62.8 57 57.9
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.7e-08 62.8 55 54.5
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.2e-08 62.4 57 57.9
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.7e-08 61.6 57 52.6
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.7e-08 61.6 57 52.6
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.7e-08 61.6 53 58.5
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.9e-08 61.2 58 53.4
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 4.9e-08 61.2 57 54.4
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.9e-08 61.2 57 54.4
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 4.9e-08 61.2 57 54.4
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 4.9e-08 61.2 47 59.6
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 6.3e-08 60.8 57 52.6
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 6.3e-08 60.8 52 59.6
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 6.3e-08 60.8 57 52.6
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 8.3e-08 60.5 57 52.6
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.1e-07 60.1 57 52.6
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.1e-07 60.1 57 56.1
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.4e-07 59.7 57 52.6
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.8e-07 59.3 47 61.7
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.1e-07 58.5 57 50.9
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.1e-07 58.5 59 49.2
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 4.1e-07 58.2 53 54.7
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 4.1e-07 58.2 57 49.1
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 5.4e-07 57.8 55 52.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 5.4e-07 57.8 57 52.6
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 7.0e-07 57.4 59 50.8
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 9.2e-07 57.0 57 50.9
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 3.5e-06 55.1 58 46.6
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.5e-06 55.1 57 47.4
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.5e-06 55.1 58 48.3
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 4.5e-06 54.7 57 43.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 5.9e-06 54.3 57 52.6
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 5.9e-06 54.3 57 45.6
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 7.8e-06 53.9 57 50.9
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 7.8e-06 53.9 57 47.4


User provided reference genes

Program Settings