Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 3.7e-61 238.0 120 100.0
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 5.3e-44 181.0 115 74.8
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 5.9e-43 177.6 118 77.1
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 7.7e-43 177.2 114 74.6
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.0e-42 176.8 114 73.7
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.0e-42 176.8 115 73.9
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.3e-42 176.4 102 80.4
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.2e-42 175.6 100 82.0
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.9e-42 175.3 114 74.6
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 2.9e-42 175.3 102 79.4
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.8e-42 174.9 102 80.4
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 6.5e-42 174.1 115 70.4
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 6.5e-42 174.1 109 73.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 8.5e-42 173.7 102 79.4
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 8.5e-42 173.7 115 71.3
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 8.5e-42 173.7 115 72.2
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.1e-41 173.3 114 72.8
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.1e-41 173.3 115 73.9
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.4e-41 172.9 105 75.2
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 1.9e-41 172.6 100 81.0
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.9e-41 172.6 115 72.2
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.9e-41 172.6 115 72.2
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.9e-41 172.6 115 72.2
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 2.5e-41 172.2 114 72.8
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 2.5e-41 172.2 111 73.9
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 2.5e-41 172.2 115 71.3
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 3.2e-41 171.8 109 75.2
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 3.2e-41 171.8 102 78.4
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 4.2e-41 171.4 110 76.4
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 5.5e-41 171.0 114 71.1
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 5.5e-41 171.0 115 69.6
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 7.2e-41 170.6 102 79.4
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 7.2e-41 170.6 115 72.2
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.2e-40 169.9 98 80.6
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 1.2e-40 169.9 102 76.5
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.6e-40 169.5 102 76.5
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.6e-40 169.5 102 77.5
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.6e-40 169.5 106 75.5
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.7e-40 168.7 100 78.0
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 2.7e-40 168.7 100 78.0
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.7e-40 168.7 115 73.0
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.7e-40 168.7 115 73.0
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 3.6e-40 168.3 115 73.0
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 3.6e-40 168.3 98 80.6
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 4.7e-40 167.9 102 76.5
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 6.1e-40 167.5 115 71.3
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 6.1e-40 167.5 98 79.6
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 6.1e-40 167.5 98 78.6
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 6.1e-40 167.5 98 78.6
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 6.1e-40 167.5 98 78.6
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 6.1e-40 167.5 116 70.7
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 6.1e-40 167.5 98 78.6
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.0e-39 166.8 115 73.0
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.0e-39 166.8 102 78.4
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.4e-39 166.4 98 77.6
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 1.4e-39 166.4 102 76.5
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.8e-39 166.0 98 77.6
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.8e-39 166.0 102 74.5
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 2.3e-39 165.6 102 76.5
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.3e-39 165.6 98 77.6
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 3.0e-39 165.2 100 77.0
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 3.0e-39 165.2 100 77.0
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 3.0e-39 165.2 115 67.0
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 3.9e-39 164.9 102 75.5
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.9e-39 164.9 98 78.6
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 5.1e-39 164.5 98 76.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 5.1e-39 164.5 98 76.5
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 6.7e-39 164.1 114 70.2
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 6.7e-39 164.1 101 77.2
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 8.8e-39 163.7 115 69.6
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.1e-38 163.3 113 69.9
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.1e-38 163.3 98 74.5
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.5e-38 162.9 115 69.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.0e-38 162.5 105 73.3
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.0e-38 162.5 105 73.3
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.0e-38 162.5 105 73.3
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.0e-38 162.5 100 75.0
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.0e-38 162.5 115 67.0
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 3.3e-38 161.8 115 67.8
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 4.4e-38 161.4 114 67.5
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 4.4e-38 161.4 100 74.0
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.7e-38 161.0 102 72.5
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.7e-38 161.0 102 72.5
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.7e-38 161.0 100 76.0
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.4e-38 160.6 115 69.6
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 9.7e-38 160.2 100 74.0
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.7e-37 159.5 115 68.7
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.7e-37 159.5 105 71.4
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.7e-37 159.5 102 72.5
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 2.2e-37 159.1 102 71.6
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.2e-37 159.1 100 76.0
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.2e-37 159.1 105 71.4
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 2.2e-37 159.1 102 72.5
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 3.7e-37 158.3 102 70.6
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.1e-36 156.8 108 65.7
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.8e-36 156.0 104 72.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 3.1e-36 155.2 115 65.2
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 9.1e-36 153.7 93 74.2
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 1.5e-35 152.9 103 68.0
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 5.9e-35 151.0 91 78.0
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 4.2e-33 144.8 117 61.5
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 3.6e-32 141.7 93 68.8
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 6.1e-32 141.0 115 64.3
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.1e-30 136.7 96 66.7
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.1e-30 136.7 96 66.7
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.0e-30 136.0 96 65.6
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 2.6e-30 135.6 92 68.5
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 4.4e-30 134.8 114 61.4
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 5.7e-30 134.4 95 61.1
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 9.7e-30 133.7 77 80.5
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.7e-29 132.9 90 64.4
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.4e-28 129.0 108 52.8
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 5.9e-27 124.4 108 57.4
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 7.7e-27 124.0 108 50.9
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.0e-26 123.6 114 57.9
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 5.0e-26 121.3 114 53.5
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 5.0e-26 121.3 106 53.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 6.5e-26 120.9 106 55.7
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.1e-25 120.2 108 49.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 4.2e-25 118.2 112 51.8
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.2e-18 95.9 56 75.0
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 4.2e-17 91.7 56 71.4
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.2e-17 90.9 50 82.0
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 6.8e-15 84.3 64 64.1
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.5e-09 66.6 50 64.0
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.3e-09 65.5 103 31.1
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.8e-07 59.7 36 72.2
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 6.8e-07 57.8 91 31.9
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 3.4e-06 55.5 28 85.7


User provided reference genes

Program Settings