Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1495.7 781 100.0
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1139.4 732 80.1
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1112.1 743 77.0
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1093.6 725 76.4
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1087.4 725 76.3
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1081.2 738 75.6
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1077.8 723 76.8
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 1.1e-311 1073.2 755 73.6
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.1e-311 1072.8 726 75.2
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 6.4e-311 1070.5 753 73.4
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 8.0e-311 1070.1 731 75.5
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 1.1e-310 1069.7 753 73.3
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 4.1e-310 1067.8 723 75.8
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 9.0e-310 1066.6 731 75.5
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 1.5e-309 1065.8 764 72.0
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 2.0e-309 1065.4 723 75.1
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 2.0e-309 1065.4 731 75.1
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 2.6e-309 1065.1 731 75.0
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 4.5e-309 1064.3 731 75.2
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 1.0e-308 1063.1 762 73.4
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 1.3e-308 1062.8 762 73.4
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 1.7e-308 1062.4 747 73.1
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 3.8e-308 1061.2 731 74.8
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 3.8e-308 1061.2 726 74.1
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 4.9e-308 1060.8 739 74.4
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 6.5e-308 1060.4 726 74.4
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 6.5e-308 1060.4 753 73.2
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 8.4e-308 1060.1 723 74.4
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 8.4e-308 1060.1 749 73.4
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 1.9e-307 1058.9 752 73.1
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 3.2e-307 1058.1 743 73.6
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 3.2e-307 1058.1 743 73.9
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 4.2e-307 1057.7 752 73.0
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 5.5e-307 1057.4 724 74.6
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 7.1e-307 1057.0 752 73.0
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 7.1e-307 1057.0 752 73.0
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 7.1e-307 1057.0 742 73.2
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 7.1e-307 1057.0 744 73.1
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 7.1e-307 1057.0 755 73.0
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 1.6e-306 1055.8 727 74.1
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 1.6e-306 1055.8 730 73.7
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 6.0e-306 1053.9 748 72.7
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 7.9e-306 1053.5 753 72.9
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 1.0e-305 1053.1 753 72.8
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 3.0e-305 1051.6 742 72.9
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 3.0e-305 1051.6 752 72.1
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 3.0e-305 1051.6 752 72.6
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 3.9e-305 1051.2 750 72.9
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 1.1e-304 1049.7 740 73.2
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 1.1e-304 1049.7 732 73.4
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 1.9e-304 1048.9 739 73.3
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 2.5e-304 1048.5 732 73.2
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 3.3e-304 1048.1 747 72.8
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 4.3e-304 1047.7 724 73.8
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 4.3e-304 1047.7 742 72.2
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 5.7e-304 1047.3 725 73.1
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 5.7e-304 1047.3 725 73.1
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 5.7e-304 1047.3 729 74.1
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 7.4e-304 1047.0 736 72.4
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 1.3e-303 1046.2 747 72.6
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 1.3e-303 1046.2 746 73.2
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 8.2e-303 1043.5 739 72.4
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 8.2e-303 1043.5 750 72.5
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 1.1e-302 1043.1 726 74.5
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 1.4e-302 1042.7 737 72.5
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 2.4e-302 1042.0 740 72.7
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 4.1e-302 1041.2 724 73.2
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 4.1e-302 1041.2 723 73.4
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 4.1e-302 1041.2 726 74.5
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 6.9e-302 1040.4 755 71.4
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 6.9e-302 1040.4 737 72.6
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 2.9e-300 1035.0 744 73.3
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 5.0e-300 1034.2 729 73.3
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 5.0e-300 1034.2 749 72.1
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 8.4e-300 1033.5 726 73.6
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 8.4e-300 1033.5 749 71.2
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 8.4e-300 1033.5 749 71.2
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 1.1e-299 1033.1 744 72.8
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 1.4e-299 1032.7 741 72.1
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 1.9e-299 1032.3 729 73.1
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 3.2e-299 1031.6 752 72.3
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 4.2e-299 1031.2 772 71.0
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 4.2e-299 1031.2 744 72.8
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 5.5e-299 1030.8 751 71.1
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 1.2e-298 1029.6 741 71.4
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 1.2e-298 1029.6 741 71.3
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 2.7e-298 1028.5 741 71.1
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 3.5e-298 1028.1 663 79.0
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 1.8e-297 1025.8 734 71.9
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 2.3e-297 1025.4 705 73.5
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 3.0e-297 1025.0 747 70.1
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 3.0e-297 1025.0 748 70.6
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 8.7e-297 1023.5 748 70.5
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.9e-296 1022.3 742 71.6
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 1.4e-294 1016.1 727 72.4
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.2e-293 1013.1 739 69.0
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 1.9e-291 1005.7 739 68.7
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 3.2e-291 1005.0 661 77.8
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 1.6e-290 1002.7 728 71.2
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 3.9e-289 998.0 732 68.6
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 4.3e-288 994.6 721 69.8
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 5.3e-286 987.6 750 69.7
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 4.8e-279 964.5 737 66.4
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 2.4e-278 962.2 692 72.0
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 5.9e-277 957.6 730 67.9
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 2.2e-276 955.7 751 67.2
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 3.8e-276 954.9 737 65.5
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.4e-270 935.6 724 66.4
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 2.4e-270 935.6 704 68.8
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 9.4e-267 923.7 736 66.2
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 3.6e-266 921.8 713 67.2
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 1.5e-248 863.2 743 62.6
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 9.8e-240 833.9 725 58.3
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 5.0e-236 821.6 727 59.6
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 3.5e-229 798.9 737 56.2
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 6.6e-228 794.7 723 59.9
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.6e-218 763.5 655 61.2
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 8.1e-218 761.1 726 60.1
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 1.8e-209 733.4 546 68.5
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 2.1e-205 719.9 578 65.9
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 3.5e-197 692.6 516 70.0
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 1.3e-194 684.1 433 79.7
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 2.0e-192 676.8 892 44.4
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.6e-181 640.6 385 82.9
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 2.9e-175 619.8 411 74.2
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 4.1e-161 572.8 547 57.6
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 5.7e-155 552.4 330 82.7
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 2.2e-151 540.4 573 53.4
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 3.4e-147 526.6 668 46.7
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 5.7e-147 525.8 391 69.6
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.9e-142 510.8 356 73.0
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 2.5e-142 510.4 533 50.5
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 8.8e-140 501.9 515 54.0
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 5.7e-131 472.6 328 73.8
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.9e-130 470.3 723 41.5
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.9e-126 457.6 735 36.9
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 4.7e-117 426.4 493 52.7
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 4.0e-116 423.3 839 32.8
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 8.9e-108 395.6 271 75.3
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 8.4e-106 389.0 267 76.0
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 3.2e-105 387.1 267 75.7
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 4.4e-99 366.7 306 63.7
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 5.4e-97 359.8 210 83.3
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 3.6e-93 347.1 235 75.3
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 1.2e-91 342.0 232 75.0
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 1.2e-91 342.0 232 75.0
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 3.4e-91 340.5 326 57.7
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 6.0e-88 329.7 279 63.8
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.3e-85 322.0 436 47.9
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 3.7e-85 320.5 211 77.7
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 1.4e-81 308.5 190 78.4
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 2.1e-80 304.7 183 79.8
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.1e-46 192.6 120 81.7
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 3.3e-46 191.0 123 74.0
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 2.4e-44 184.9 177 53.1
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 5.7e-38 163.7 159 55.3
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 2.2e-37 161.8 150 62.0
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 3.7e-37 161.0 218 47.2
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 5.9e-35 153.7 128 63.3
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 4.8e-29 134.0 143 58.0
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.4e-28 132.5 125 56.0
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 2.0e-27 128.6 110 60.0
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 4.5e-27 127.5 78 82.1
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 1.7e-26 125.6 823 21.5
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 1.6e-19 102.4 258 35.7
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 1.7e-18 99.0 104 54.8
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 3.8e-18 97.8 81 66.7
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 3.8e-18 97.8 81 66.7
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 7.3e-17 93.6 68 66.2
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 8.3e-13 80.1 68 57.4
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 1.8e-12 79.0 91 46.2
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 7.0e-12 77.0 59 64.4
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 3.5e-11 74.7 57 63.2
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 1.0e-10 73.2 82 52.4
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 2.3e-10 72.0 51 66.7
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 2.5e-09 68.6 51 66.7
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 2.5e-09 68.6 51 66.7
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 2.5e-09 68.6 51 66.7
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 7.3e-09 67.0 51 64.7
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 7.5e-06 57.0 44 70.5


User provided reference genes

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