Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.2e-56 223.0 120 100.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 8.5e-26 120.6 115 58.3
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.1e-25 120.2 119 57.1
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.5e-25 119.0 118 54.2
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 4.2e-25 118.2 118 55.9
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 7.2e-25 117.5 116 56.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.6e-24 116.3 118 54.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.6e-24 116.3 118 52.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.1e-24 115.9 118 54.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.7e-24 115.5 117 54.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.7e-24 115.5 118 54.2
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 4.7e-24 114.8 118 54.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.7e-24 114.8 118 54.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.7e-24 114.8 120 55.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 6.1e-24 114.4 115 54.8
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 6.1e-24 114.4 117 54.7
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 6.1e-24 114.4 118 53.4
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.1e-24 114.4 120 55.0
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 53.4
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 53.4
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 53.4
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 53.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 53.4
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 52.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 8.0e-24 114.0 118 53.4
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 53.4
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 52.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 52.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 54.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 53.4
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 53.4
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 52.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.0e-23 113.6 118 53.4
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.4e-23 113.2 118 52.5
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.4e-23 113.2 115 53.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.4e-23 113.2 117 53.8
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.4e-23 113.2 119 50.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.4e-23 113.2 115 54.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.8e-23 112.8 118 52.5
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.8e-23 112.8 118 50.8
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.8e-23 112.8 118 54.2
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 2.3e-23 112.5 118 52.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.0e-23 112.1 115 53.9
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 3.0e-23 112.1 118 52.5
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 5.2e-23 111.3 118 50.8
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 5.2e-23 111.3 118 51.7
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.2e-23 111.3 118 51.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 8.8e-23 110.5 115 52.2
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 8.8e-23 110.5 118 51.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 8.8e-23 110.5 118 50.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 8.8e-23 110.5 117 53.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.5e-22 109.8 118 51.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.5e-22 109.8 118 52.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.5e-22 109.8 118 54.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.5e-22 109.8 115 51.3
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.5e-22 109.8 118 51.7
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-22 109.8 115 53.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.0e-22 109.4 117 50.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 2.0e-22 109.4 113 53.1
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.0e-22 109.4 118 50.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-22 109.4 118 51.7
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.0e-22 109.4 118 49.2
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.6e-22 109.0 115 51.3
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.6e-22 109.0 118 50.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.6e-22 109.0 115 52.2
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.6e-22 109.0 118 50.8
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.6e-22 109.0 117 52.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.3e-22 108.6 115 52.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.3e-22 108.6 118 48.3
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.3e-22 108.6 118 51.7
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 4.4e-22 108.2 118 50.0
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.7e-22 107.8 115 50.4
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.7e-22 107.8 115 49.6
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 5.7e-22 107.8 115 49.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 7.5e-22 107.5 115 50.4
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 7.5e-22 107.5 115 50.4
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 7.5e-22 107.5 118 49.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.5e-22 107.5 118 50.0
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 9.7e-22 107.1 118 50.8
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 9.7e-22 107.1 116 52.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 9.7e-22 107.1 118 50.8
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.3e-21 106.7 118 49.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.3e-21 106.7 120 48.3
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.7e-21 106.3 117 50.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.7e-21 106.3 118 50.0
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.7e-21 106.3 118 49.2
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-21 105.9 118 49.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.8e-21 105.5 117 51.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.8e-21 105.5 118 50.8
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 4.8e-21 104.8 118 51.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 4.8e-21 104.8 117 49.6
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.3e-21 104.4 118 50.8
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.1e-20 103.6 112 55.4
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-20 103.2 118 50.8
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.4e-20 103.2 115 48.7
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.4e-20 103.2 117 49.6
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-20 102.8 117 49.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 3.1e-20 102.1 115 47.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 4.1e-20 101.7 117 49.6
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 5.3e-20 101.3 123 48.0
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 7.0e-20 100.9 119 46.2
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.0e-20 100.9 117 51.3
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 9.1e-20 100.5 106 53.8
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.6e-19 99.8 109 49.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.7e-19 99.0 117 48.7
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.5e-19 98.6 119 46.2
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 3.5e-19 98.6 116 49.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.5e-19 98.2 118 46.6
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 7.7e-19 97.4 119 48.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.3e-18 96.7 107 52.3
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-18 96.3 118 48.3
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.2e-18 95.9 115 47.0
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 5.0e-18 94.7 116 46.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.1e-17 93.6 103 50.5
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 3.2e-17 92.0 118 44.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.2e-17 92.0 98 54.1
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.2e-17 91.7 121 43.0
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 9.4e-17 90.5 90 56.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-16 90.1 104 48.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.6e-16 89.7 116 45.7
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.1e-16 89.4 121 43.0
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 2.1e-16 89.4 118 44.9
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.7e-16 89.0 116 46.6
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 3.6e-16 88.6 117 46.2
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 3.6e-16 88.6 115 43.5
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 3.6e-16 88.6 117 47.0
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.0e-15 87.0 118 44.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-15 86.3 117 44.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 8.8e-15 84.0 98 50.0
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-14 83.6 96 49.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-14 83.6 115 47.0
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-14 83.2 95 49.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.5e-14 83.2 95 49.5
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.5e-14 83.2 115 41.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 2.6e-14 82.4 96 47.9
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 3.4e-14 82.0 108 46.3
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 5.7e-14 81.3 112 43.8
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 7.5e-14 80.9 99 44.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.3e-13 80.1 115 40.9
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.7e-13 78.6 104 46.2
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.4e-12 75.9 87 49.4
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.6e-11 73.2 79 51.9
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.6e-11 73.2 78 52.6
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.0e-11 72.8 116 40.5
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.5e-11 72.0 104 44.2
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 3.8e-10 68.6 100 45.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 8.6e-10 67.4 91 46.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.3e-09 65.5 92 46.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.1e-08 62.8 95 41.1
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 8.9e-07 57.4 86 39.5
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 8.9e-07 57.4 57 52.6
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-06 56.6 79 41.8
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.7e-06 54.7 59 54.2


User provided reference genes

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