Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.0e-87 326.6 159 100.0
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 7.2e-65 250.8 149 78.5
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.2e-62 243.4 149 75.8
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 2.4e-60 235.7 149 71.1
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 3.1e-60 235.3 149 71.8
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 4.1e-60 235.0 149 73.8
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 7.0e-60 234.2 149 70.5
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 7.0e-60 234.2 149 71.1
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 9.1e-60 233.8 149 70.5
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 9.1e-60 233.8 149 71.8
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.2e-59 233.4 149 70.5
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.6e-59 233.0 149 69.8
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 4.5e-59 231.5 147 70.1
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 2.3e-58 229.2 149 68.5
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 2.3e-58 229.2 151 70.2
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 3.8e-58 228.4 147 70.7
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.8e-58 228.4 149 69.1
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 3.8e-58 228.4 147 70.1
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 5.0e-58 228.0 147 68.7
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 6.6e-58 227.6 149 69.1
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.1e-57 226.9 146 70.5
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 3.3e-57 225.3 149 69.1
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 4.2e-57 224.9 147 68.7
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 5.5e-57 224.6 145 69.7
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 7.2e-57 224.2 151 67.5
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 9.5e-57 223.8 149 68.5
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.6e-56 223.0 149 66.4
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 1.6e-56 223.0 151 66.9
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 1.6e-56 223.0 147 68.7
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 1.6e-56 223.0 149 66.4
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 1.6e-56 223.0 149 65.8
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 3.6e-56 221.9 147 66.7
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 4.7e-56 221.5 147 68.0
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 4.7e-56 221.5 149 67.8
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 8.0e-56 220.7 149 67.8
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 8.0e-56 220.7 153 67.3
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 8.0e-56 220.7 151 66.2
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 1.0e-55 220.3 149 65.8
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 1.4e-55 219.9 149 65.1
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 2.3e-55 219.2 147 62.6
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 2.3e-55 219.2 147 63.3
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 2.3e-55 219.2 149 65.1
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 5.2e-55 218.0 125 81.6
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 5.2e-55 218.0 147 63.3
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 8.9e-55 217.2 147 61.9
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 8.9e-55 217.2 147 62.6
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 8.9e-55 217.2 147 62.6
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 8.9e-55 217.2 149 65.1
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 1.2e-54 216.9 149 65.1
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 1.2e-54 216.9 149 63.8
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 1.5e-54 216.5 149 60.4
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 2.0e-54 216.1 147 61.9
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 2.0e-54 216.1 146 67.8
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 2.6e-54 215.7 147 61.9
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 2.6e-54 215.7 149 65.1
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 3.4e-54 215.3 149 64.4
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 3.4e-54 215.3 149 63.8
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 7.5e-54 214.2 150 64.7
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 7.5e-54 214.2 144 67.4
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 7.5e-54 214.2 149 61.1
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 9.8e-54 213.8 149 64.4
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 1.3e-53 213.4 149 64.4
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 2.9e-53 212.2 147 61.9
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 3.7e-53 211.8 149 65.1
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 8.3e-53 210.7 149 65.1
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.4e-52 209.1 140 62.9
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 5.4e-52 208.0 149 64.4
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 7.0e-52 207.6 147 64.6
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 7.0e-52 207.6 147 61.2
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 9.2e-52 207.2 149 61.1
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 2.7e-51 205.7 149 60.4
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 2.7e-51 205.7 147 63.9
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 3.5e-51 205.3 159 61.0
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 3.5e-51 205.3 147 60.5
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 4.6e-51 204.9 149 60.4
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 1.3e-50 203.4 149 63.1
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 1.3e-50 203.4 149 63.1
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 2.9e-50 202.2 145 62.1
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 2.9e-50 202.2 144 62.5
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 3.9e-50 201.8 150 63.3
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 3.9e-50 201.8 150 63.3
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 3.9e-50 201.8 149 57.7
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 7.3e-49 197.6 128 68.8
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 9.5e-49 197.2 149 60.4
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 9.5e-49 197.2 150 60.7
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 1.2e-48 196.8 139 64.0
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.8e-48 195.7 143 60.8
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 1.8e-47 193.0 149 61.1
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 5.8e-46 188.0 129 63.6
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 2.0e-43 179.5 153 55.6
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 2.0e-43 179.5 156 55.1
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 4.6e-43 178.3 149 56.4
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 8.6e-42 174.1 125 62.4
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 1.6e-40 169.9 150 52.0
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 2.6e-38 162.5 163 49.1
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.4e-38 162.2 160 47.5
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.4e-38 162.2 160 47.5
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 1.7e-37 159.8 151 52.3
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 3.7e-37 158.7 153 49.0
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 2.1e-35 152.9 84 84.5
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 4.3e-33 145.2 168 45.8
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 3.4e-30 135.6 89 65.2
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 7.6e-30 134.4 82 68.3
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 1.3e-29 133.7 89 64.0
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 4.9e-29 131.7 128 53.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 3.2e-28 129.0 137 46.7
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 3.2e-28 129.0 143 42.7
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 7.3e-25 117.9 124 47.6
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.2e-24 117.1 106 55.7
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 2.3e-18 96.3 166 32.5
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 5.6e-17 91.7 151 33.8
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 2.8e-16 89.4 241 25.3
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 3.8e-13 79.0 112 35.7
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 7.1e-12 74.7 54 55.6


User provided reference genes

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