Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.1e-136 488.4 240 100.0
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 6.5e-102 374.4 256 72.7
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.1e-101 373.6 223 80.3
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 3.6e-100 368.6 234 75.6
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 4.9e-97 358.2 236 73.7
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 4.9e-97 358.2 240 72.5
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 6.3e-97 357.8 235 73.2
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 1.8e-96 356.3 218 78.0
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 4.1e-96 355.1 266 68.8
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 5.4e-96 354.8 228 75.0
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 5.4e-96 354.8 241 72.2
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 5.4e-96 354.8 240 71.7
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 9.2e-96 354.0 227 74.9
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 9.2e-96 354.0 225 74.7
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 1.6e-95 353.2 240 74.2
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.6e-95 353.2 236 71.6
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 1.6e-95 353.2 223 74.9
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 2.0e-95 352.8 227 73.1
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 2.0e-95 352.8 223 75.3
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 5.9e-95 351.3 228 74.1
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 5.9e-95 351.3 233 72.1
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 5.9e-95 351.3 237 71.7
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 7.8e-95 350.9 225 76.0
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 2.3e-94 349.4 230 73.9
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.9e-94 349.0 212 77.4
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.8e-94 348.6 232 72.0
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 5.0e-94 348.2 227 74.4
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 5.0e-94 348.2 226 73.9
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 8.6e-94 347.4 235 71.1
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 8.6e-94 347.4 233 71.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.9e-93 346.3 226 73.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 2.5e-93 345.9 223 74.9
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 2.5e-93 345.9 229 71.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 5.6e-93 344.7 229 72.5
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 5.6e-93 344.7 220 75.0
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 7.3e-93 344.4 223 73.5
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 9.5e-93 344.0 238 71.4
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 9.5e-93 344.0 211 76.8
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.2e-92 343.6 238 71.4
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.6e-92 343.2 220 75.5
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.6e-92 343.2 220 75.5
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.6e-92 343.2 228 72.4
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.8e-92 342.4 220 75.5
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.6e-92 342.0 220 75.5
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 3.6e-92 342.0 220 76.4
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 4.7e-92 341.7 233 70.8
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 6.1e-92 341.3 224 74.6
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 8.0e-92 340.9 217 73.3
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.4e-91 340.1 214 75.2
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.4e-91 340.1 223 73.5
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.8e-91 339.7 217 73.7
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 2.3e-91 339.3 223 73.5
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 5.2e-91 338.2 225 75.1
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 6.8e-91 337.8 240 70.4
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 6.8e-91 337.8 221 74.2
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 8.9e-91 337.4 216 75.0
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 8.9e-91 337.4 219 74.0
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 1.5e-90 336.7 233 72.1
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.0e-90 336.3 201 78.6
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.0e-90 336.3 218 73.9
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 3.4e-90 335.5 217 74.2
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 3.4e-90 335.5 217 72.8
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 4.4e-90 335.1 245 66.9
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 5.7e-90 334.7 235 70.2
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 1.3e-89 333.6 216 74.5
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 3.7e-89 332.0 217 74.7
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.7e-89 332.0 242 67.4
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.7e-89 332.0 242 67.4
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 4.9e-89 331.6 217 73.7
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.1e-88 330.5 217 74.2
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.1e-88 330.5 217 74.2
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 1.4e-88 330.1 235 68.9
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.8e-88 329.7 225 71.1
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 3.2e-88 328.9 218 73.9
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 7.0e-88 327.8 226 70.4
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 7.0e-88 327.8 217 71.9
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.2e-87 327.0 228 69.3
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.0e-86 323.9 209 73.7
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 6.6e-86 321.2 217 70.0
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.5e-85 320.1 231 67.5
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 2.5e-85 319.3 229 69.0
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 3.3e-85 318.9 218 68.3
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 2.1e-84 316.2 222 68.5
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.6e-84 315.5 242 65.3
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 8.0e-84 314.3 242 65.7
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.3e-83 312.8 221 71.0
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 6.8e-83 311.2 224 67.9
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 2.6e-82 309.3 228 68.4
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 5.8e-82 308.1 215 69.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 3.7e-81 305.4 212 69.8
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 2.2e-73 279.6 224 60.7
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 5.1e-70 268.5 216 59.7
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 2.8e-68 262.7 173 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 2.2e-65 253.1 213 57.3
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 7.1e-64 248.1 216 56.5
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.9e-56 223.4 145 72.4
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 4.2e-56 222.2 158 67.1
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 2.7e-55 219.5 215 51.6
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.0e-54 217.6 158 67.7
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 3.9e-54 215.7 211 49.3
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 4.0e-51 205.7 138 71.0
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 7.6e-50 201.4 166 61.4
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 4.9e-49 198.7 190 49.5
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.4e-48 197.2 144 68.8
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.1e-48 194.9 137 69.3
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.1e-44 183.3 117 74.4
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 4.0e-43 179.1 132 65.2
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 8.4e-41 171.4 114 71.1
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.7e-39 166.4 150 59.3
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 3.4e-34 149.4 94 74.5
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.6e-31 139.0 82 80.5
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.9e-31 138.3 82 79.3
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 2.4e-19 100.1 87 56.3
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 3.4e-18 96.3 88 56.8
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 4.2e-16 89.4 224 26.3
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.1e-11 73.2 216 25.0
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 9.1e-11 71.6 221 23.5
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.0e-10 70.5 221 24.9
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.6e-10 70.1 216 22.7
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 5.9e-10 68.9 216 22.2
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 5.9e-10 68.9 233 23.6
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 7.7e-10 68.6 221 23.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.3e-09 67.8 124 29.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.2e-09 67.0 226 22.6
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.2e-09 67.0 216 22.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.9e-09 66.6 216 24.1
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.8e-09 66.2 228 23.2
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 5.0e-09 65.9 49 67.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 5.0e-09 65.9 216 22.2
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 6.5e-09 65.5 202 22.3
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 6.5e-09 65.5 221 22.2
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 8.5e-09 65.1 216 23.1
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 8.5e-09 65.1 216 22.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.1e-08 64.7 216 21.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.4e-08 64.3 202 24.8
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.4e-08 64.3 226 21.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.9e-08 63.9 224 23.7
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.9e-08 63.9 216 23.1
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.9e-08 63.9 216 22.2
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.5e-08 63.5 216 24.1
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.5e-08 63.5 227 22.9
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.5e-08 63.5 227 23.3
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.5e-08 63.5 218 23.9
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.2e-08 63.2 226 22.6
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 3.2e-08 63.2 224 23.7
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.2e-08 63.2 216 22.2
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.2e-08 62.8 225 21.3
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.2e-08 62.8 227 22.0
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.2e-08 62.8 216 21.3
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 5.5e-08 62.4 40 65.0
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 5.5e-08 62.4 216 21.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 7.2e-08 62.0 216 23.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 7.2e-08 62.0 216 21.8
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 7.2e-08 62.0 209 23.9
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 7.2e-08 62.0 48 66.7
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 9.4e-08 61.6 219 20.1
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 9.4e-08 61.6 217 23.0
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 9.4e-08 61.6 221 21.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.2e-07 61.2 205 24.9
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.2e-07 61.2 221 21.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.1e-07 60.5 168 25.0
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 2.1e-07 60.5 46 56.5
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.7e-07 60.1 226 22.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.6e-07 59.7 202 23.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.6e-07 59.7 211 23.7
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.7e-07 59.3 210 24.8
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.7e-07 59.3 168 22.6
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.1e-07 58.9 169 21.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.0e-06 58.2 202 22.3
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.0e-06 58.2 209 23.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.0e-06 58.2 168 21.4
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.0e-06 58.2 216 21.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.0e-06 56.6 184 21.7
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 5.2e-06 55.8 222 21.6
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 8.8e-06 55.1 130 23.1


User provided reference genes

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