Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.3e-238 828.6 434 100.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 5.2e-174 614.8 427 73.5
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.7e-172 608.6 430 71.9
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.1e-168 597.0 433 70.7
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.4e-165 585.1 431 70.3
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.9e-164 582.4 410 72.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.4e-163 580.1 429 69.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 9.2e-163 577.4 431 68.2
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-161 573.2 428 70.1
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.3e-160 568.9 427 69.3
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-159 567.0 427 69.1
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.8e-159 565.8 427 69.1
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 6.2e-159 564.7 446 65.7
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.4e-158 563.5 426 69.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.8e-158 563.1 436 65.8
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.1e-158 562.4 408 68.4
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 4.0e-158 562.0 434 66.1
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 3.4e-157 558.9 433 66.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.3e-156 557.0 431 66.8
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.9e-156 555.8 438 66.2
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 2.9e-156 555.8 430 66.7
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.9e-156 555.1 438 66.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-155 553.9 426 68.5
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 3.2e-155 552.4 430 64.9
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.6e-154 550.1 422 66.8
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.3e-153 546.2 437 64.8
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 2.3e-153 546.2 429 65.0
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.5e-152 543.5 417 64.7
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.5e-152 543.5 435 64.8
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.5e-152 543.5 428 65.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.9e-152 543.1 426 66.7
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.3e-152 542.3 428 65.2
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.3e-152 542.3 429 65.5
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.3e-152 542.0 410 68.5
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.3e-152 542.0 426 65.3
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 4.3e-152 542.0 430 64.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 5.6e-152 541.6 435 64.6
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 9.5e-152 540.8 429 63.4
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.5e-152 540.8 425 66.4
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-151 540.0 426 65.3
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.8e-150 536.6 438 64.2
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.1e-150 535.8 429 63.4
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.0e-150 535.4 429 63.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 5.2e-150 535.0 426 65.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 6.8e-150 534.6 429 62.7
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 8.9e-150 534.3 429 63.9
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.6e-149 532.7 428 64.7
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.4e-149 531.9 428 64.7
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 4.4e-149 531.9 428 63.6
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 9.9e-149 530.8 429 63.9
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 1.7e-148 530.0 429 64.3
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.2e-148 529.6 444 64.9
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.9e-148 529.3 428 64.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 3.8e-148 528.9 430 64.2
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 5.4e-147 525.0 430 63.5
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.1e-146 523.1 428 64.3
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.1e-146 523.1 429 63.6
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.8e-146 521.2 431 62.4
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.0e-145 520.8 434 62.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.7e-145 520.0 427 65.8
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.7e-145 520.0 429 63.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.5e-144 516.9 419 65.6
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.9e-144 516.5 431 62.6
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.3e-144 515.4 428 62.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 5.6e-144 515.0 411 64.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 7.3e-144 514.6 431 61.9
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.3e-143 513.8 411 63.7
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-143 513.8 426 62.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.6e-143 513.5 435 61.8
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 3.6e-143 512.3 425 63.5
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.8e-142 510.0 410 63.4
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-141 507.3 429 63.6
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.0e-141 506.5 432 62.5
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.6e-141 506.1 369 68.6
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.4e-141 505.8 431 60.6
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 3.4e-141 505.8 432 62.5
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.3e-140 503.8 410 63.7
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.7e-140 503.4 426 63.4
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.7e-140 503.4 426 63.4
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.2e-140 503.1 431 61.7
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.4e-140 501.5 431 62.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 8.4e-140 501.1 411 63.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 8.4e-140 501.1 428 60.0
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.4e-139 499.6 430 61.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.2e-139 499.2 407 63.9
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-138 497.3 508 55.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.1e-138 496.5 421 63.4
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.1e-138 496.5 426 62.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.5e-138 495.7 429 61.1
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.5e-138 495.7 435 62.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 6.6e-137 491.5 435 61.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.1e-136 490.7 428 61.0
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.5e-136 489.6 437 61.1
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.5e-136 489.6 425 60.0
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 9.6e-136 487.6 372 65.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.6e-135 485.7 432 60.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.1e-134 482.6 430 60.5
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.0e-134 482.3 470 57.4
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 4.5e-133 478.8 420 60.0
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.9e-133 477.6 405 61.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.7e-132 476.9 429 58.3
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 4.9e-132 475.3 409 61.4
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 6.4e-132 474.9 409 61.1
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 8.4e-132 474.6 409 60.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-131 474.2 400 63.5
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 4.2e-131 472.2 429 60.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.1e-131 471.5 411 61.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 7.1e-131 471.5 412 61.7
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.6e-130 470.3 409 60.6
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.3e-128 462.6 428 58.6
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.8e-127 458.8 430 60.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 2.4e-126 456.4 427 56.7
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-125 454.1 410 60.5
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 5.8e-125 451.8 432 56.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.3e-124 450.7 373 62.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 4.9e-124 448.7 428 57.9
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 7.1e-123 444.9 419 56.8
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 7.4e-120 434.9 295 73.9
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.7e-119 432.6 441 58.7
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.7e-116 423.7 427 55.7
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.2e-114 417.5 312 70.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.5e-112 410.6 514 47.7
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 9.7e-104 381.3 425 51.8
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 6.9e-102 375.2 430 50.2
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.6e-101 373.2 342 58.5
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 2.2e-100 370.2 300 65.7
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 7.9e-98 361.7 344 59.0
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.5e-93 347.4 288 61.1
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.7e-87 327.4 431 43.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.7e-82 310.1 427 41.2
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.2e-75 286.6 248 60.9
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.8e-73 278.5 418 44.5
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.7e-71 273.1 320 48.8
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.0e-70 268.9 179 71.5
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.1e-62 245.0 181 68.0
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.2e-62 241.9 200 63.5
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 8.0e-58 228.8 176 63.1
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.6e-56 223.8 153 70.6
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.3e-52 211.5 192 61.5
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.6e-50 203.4 159 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.3e-43 179.1 139 59.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.8e-42 177.2 146 65.8
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 3.6e-34 150.2 240 40.8
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 2.2e-31 141.0 120 65.8
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 6.0e-29 132.9 92 70.7
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.5e-27 127.5 81 69.1
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.4e-25 121.7 87 67.8
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.9e-17 92.8 104 52.9
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.6e-16 90.9 79 58.2
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.9e-15 86.7 326 26.7
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.6e-13 80.1 367 26.4
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 9.6e-11 72.4 391 24.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.4e-09 68.6 129 34.1
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.1e-09 67.4 194 29.4
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.4e-08 63.9 200 28.0
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.5e-08 63.5 200 28.5
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 2.9e-07 60.8 51 56.9
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.4e-06 58.5 194 27.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.9e-06 58.2 255 25.9
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.2e-06 57.0 194 25.8


User provided reference genes

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