Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 5.5e-229 797.3 421 100.0
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.5e-181 639.0 419 80.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.3e-181 638.6 419 79.5
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.1e-179 633.6 417 78.4
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.8e-178 627.9 401 81.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.7e-177 626.3 420 77.1
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 6.4e-177 624.4 412 80.1
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.6e-175 619.8 419 79.0
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 7.8e-175 617.5 396 81.6
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 3.9e-174 615.1 421 76.7
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.5e-173 612.5 396 81.1
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 9.5e-173 610.5 420 77.9
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 9.5e-173 610.5 420 75.2
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.8e-172 609.0 401 79.8
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 6.2e-172 607.8 399 79.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.1e-172 607.4 424 77.1
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 8.1e-172 607.4 420 76.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 8.1e-172 607.4 420 76.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 8.1e-172 607.4 420 77.1
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.8e-171 606.3 417 76.5
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 4.0e-171 605.1 401 79.3
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 6.8e-171 604.4 426 76.1
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 2.0e-170 602.8 428 74.8
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.0e-170 602.8 396 80.1
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.6e-170 602.4 410 78.8
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.4e-170 601.7 424 75.7
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 7.5e-170 600.9 411 75.9
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.7e-169 599.7 419 76.4
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.7e-169 599.7 420 77.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.2e-169 599.4 413 75.1
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.7e-169 598.6 419 75.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 3.7e-169 598.6 419 76.1
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 6.4e-169 597.8 420 76.0
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 8.3e-169 597.4 392 78.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.1e-168 597.0 417 76.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.4e-168 596.7 413 78.7
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.1e-168 595.1 424 75.0
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 5.4e-168 594.7 399 79.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 5.4e-168 594.7 414 76.3
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 5.4e-168 594.7 396 78.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 7.1e-168 594.3 414 75.6
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 7.1e-168 594.3 392 78.3
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.2e-167 593.6 385 81.6
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.6e-167 593.2 422 75.8
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.6e-167 593.2 395 78.7
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 2.7e-167 592.4 426 74.6
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.7e-167 592.4 422 76.3
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.3e-166 590.1 417 76.0
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 3.0e-166 589.0 422 75.1
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 3.9e-166 588.6 392 78.6
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 5.1e-166 588.2 396 77.5
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.1e-166 588.2 397 78.6
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 8.6e-166 587.4 411 76.9
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 8.6e-166 587.4 414 76.3
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.9e-165 586.3 420 75.7
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.9e-165 586.3 397 78.8
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.5e-165 585.9 404 78.2
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.6e-165 584.7 422 75.1
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.2e-164 583.6 410 75.6
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.8e-164 582.4 420 73.3
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.7e-164 581.6 414 75.4
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 6.2e-164 581.3 451 72.1
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.4e-163 580.1 411 73.7
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.8e-163 579.7 395 77.2
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.4e-163 579.3 414 74.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.1e-163 578.9 415 75.2
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.9e-163 577.4 420 73.1
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.2e-162 577.0 395 76.5
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.6e-162 575.9 418 73.9
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 4.4e-162 575.1 396 76.8
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.3e-161 573.5 393 76.8
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.9e-161 572.4 417 73.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 4.9e-161 571.6 393 76.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.9e-161 571.6 413 73.1
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 6.4e-161 571.2 398 75.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.4e-161 571.2 398 75.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.1e-160 570.5 398 75.6
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.1e-160 570.5 398 75.6
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 2.4e-160 569.3 398 75.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.1e-160 568.5 415 72.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 4.1e-160 568.5 398 75.1
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 5.4e-160 568.2 398 74.9
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 2.1e-159 566.2 400 75.0
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.7e-159 565.8 400 75.5
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 3.5e-159 565.5 398 75.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.5e-159 565.5 425 71.5
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 6.0e-159 564.7 398 75.4
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 2.3e-158 562.8 398 74.9
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.9e-157 559.7 393 75.3
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 3.3e-157 558.9 398 73.4
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.3e-157 558.5 358 82.4
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 5.6e-157 558.1 398 74.9
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.1e-156 556.2 440 69.3
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.5e-154 550.1 439 70.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.4e-152 543.5 502 62.7
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 7.1e-152 541.2 387 74.4
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 8.7e-150 534.3 348 81.0
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 7.3e-149 531.2 371 73.9
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.8e-148 528.5 355 78.0
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.0e-146 523.1 361 77.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 8.4e-145 517.7 372 72.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 6.7e-142 508.1 346 78.3
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 6.2e-140 501.5 372 71.5
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.4e-136 490.3 358 74.0
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.2e-135 487.3 420 63.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.3e-134 483.8 335 74.6
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.1e-133 480.7 433 63.3
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 4.5e-122 442.2 310 77.7
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 7.4e-117 424.9 373 61.4
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.3e-116 424.1 428 59.8
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.1e-109 401.0 309 68.0
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.8e-107 393.7 279 73.5
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.1e-104 384.4 251 80.1
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 4.7e-103 379.0 385 57.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 2.6e-101 373.2 382 56.3
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 5.3e-99 365.5 365 58.1
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.3e-84 315.5 235 71.9
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.4e-83 313.5 227 73.6
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.2e-63 245.7 182 74.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-52 210.7 144 79.2
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.9e-52 209.5 151 76.8
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.6e-49 199.1 137 78.1
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.4e-46 190.7 359 37.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 6.8e-46 189.1 167 61.1
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.5e-37 161.4 140 65.7
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.6e-37 160.6 137 66.4
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 3.2e-35 153.7 96 78.1
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.3e-33 148.3 141 60.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 9.6e-32 142.1 124 62.1
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 8.1e-31 139.0 158 54.4
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.4e-27 128.3 73 83.6
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 2.3e-25 120.9 100 61.0
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 6.7e-25 119.4 78 78.2
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 2.6e-21 107.5 147 48.3
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.9e-19 101.3 118 52.5
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 5.5e-19 99.8 77 70.1
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.2e-18 98.6 147 45.6
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 6.0e-18 96.3 87 59.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.3e-16 90.5 84 60.7
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.3e-16 90.5 84 60.7
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.8e-14 84.7 92 56.5
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 2.6e-13 80.9 78 57.7
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.7e-12 78.2 111 48.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 2.2e-12 77.8 111 47.7
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 4.9e-12 76.6 111 47.7
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 4.9e-12 76.6 111 47.7
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 4.9e-12 76.6 111 47.7
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 8.4e-12 75.9 111 47.7
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 8.4e-12 75.9 111 46.8
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 8.4e-12 75.9 167 33.5
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-11 75.5 106 47.2
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-11 75.5 106 47.2
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.9e-11 74.7 106 45.3
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.9e-11 74.7 63 65.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-11 74.3 80 55.0
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 3.2e-11 73.9 63 63.5
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.1e-10 71.2 91 48.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 4.6e-10 70.1 178 32.6
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.0e-09 68.9 113 46.0
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 4.3e-08 63.5 81 50.6
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 2.8e-07 60.8 39 76.9
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 6.3e-07 59.7 47 68.1
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 8.2e-07 59.3 43 69.8
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 1.4e-06 58.5 81 40.7
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.1e-06 57.0 48 66.7
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 5.3e-06 56.6 60 55.0
BcaB08g35223 Brassica carinata HOM05D004269 ORTHO05D016737 6.9e-06 56.2 38 71.1


User provided reference genes

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