Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 4.2e-113 411.4 211 100.0
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.9e-29 132.9 174 52.9
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 3.0e-26 122.9 216 42.6
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 3.9e-26 122.5 206 46.6
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.5e-25 120.6 177 46.3
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 2.2e-21 106.7 199 40.2
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 9.4e-20 101.3 152 46.1
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 3.3e-17 92.8 98 50.0
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 3.7e-16 89.4 98 48.0
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 4.8e-16 89.0 95 55.8
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 8.2e-16 88.2 100 54.0
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 1.1e-15 87.8 99 50.5
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.8e-15 87.0 123 47.2
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.4e-15 86.7 99 51.5
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 5.3e-15 85.5 100 52.0
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 5.3e-15 85.5 91 53.8
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 7.0e-15 85.1 139 44.6
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 1.6e-14 84.0 168 38.7
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.6e-14 84.0 169 40.2
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.6e-14 84.0 67 59.7
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.6e-14 83.2 139 43.2
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.6e-14 83.2 82 56.1
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 2.6e-14 83.2 168 40.5
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 3.5e-14 82.8 149 45.6
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.5e-14 82.8 79 54.4
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 4.5e-14 82.4 92 55.4
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 5.9e-14 82.0 139 43.2
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 7.7e-14 81.6 77 57.1
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.0e-13 81.3 111 45.0
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 1.0e-13 81.3 56 67.9
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 1.0e-13 81.3 79 53.2
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.3e-13 80.9 99 46.5
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.3e-13 80.9 124 39.5
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.3e-13 80.9 138 44.2
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 1.7e-13 80.5 90 53.3
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 1.7e-13 80.5 122 46.7
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 2.2e-13 80.1 108 50.0
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.2e-13 80.1 102 47.1
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 2.2e-13 80.1 91 48.4
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 2.2e-13 80.1 91 48.4
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 2.9e-13 79.7 85 55.3
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.8e-13 79.3 55 65.5
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 3.8e-13 79.3 55 65.5
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 3.8e-13 79.3 105 49.5
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 5.0e-13 79.0 122 48.4
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 6.5e-13 78.6 134 38.8
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 6.5e-13 78.6 116 49.1
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 8.5e-13 78.2 96 50.0
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.5e-13 78.2 85 51.8
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.5e-12 77.4 49 73.5
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 1.9e-12 77.0 93 51.6
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 2.5e-12 76.6 66 57.6
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 2.5e-12 76.6 163 36.8
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 2.5e-12 76.6 135 43.7
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.2e-12 76.3 99 45.5
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 4.2e-12 75.9 85 54.1
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 5.5e-12 75.5 103 48.5
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.5e-12 75.5 94 50.0
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 7.2e-12 75.1 88 51.1
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 1.6e-11 73.9 143 35.7
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.7e-11 73.2 64 54.7
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 2.7e-11 73.2 42 81.0
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 3.6e-11 72.8 108 45.4
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 3.6e-11 72.8 94 48.9
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 3.6e-11 72.8 102 49.0
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 3.6e-11 72.8 92 43.5
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 3.6e-11 72.8 95 46.3
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.7e-11 72.4 64 54.7
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 6.1e-11 72.0 133 42.9
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 8.0e-11 71.6 102 49.0
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 8.0e-11 71.6 99 49.5
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.0e-10 71.2 120 42.5
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.0e-10 71.2 64 51.6
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 1.0e-10 71.2 73 56.2
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.4e-10 70.9 52 65.4
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.4e-10 70.9 106 46.2
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.4e-10 70.9 147 42.9
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.4e-10 70.9 157 37.6
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 1.8e-10 70.5 68 52.9
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.8e-10 70.5 120 42.5
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 2.3e-10 70.1 102 44.1
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 2.3e-10 70.1 155 34.2
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.0e-10 69.7 100 45.0
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.0e-10 69.7 95 49.5
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 4.0e-10 69.3 88 52.3
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 4.0e-10 69.3 146 38.4
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 6.8e-10 68.6 44 72.7
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 6.8e-10 68.6 107 43.0
unitig_578.g15702 Utricularia gibba HOM05D004206 ORTHO05D003325 6.8e-10 68.6 93 44.1
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 6.8e-10 68.6 104 45.2
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 8.8e-10 68.2 154 33.8
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 1.2e-09 67.8 171 39.8
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.2e-09 67.8 91 48.4
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 1.5e-09 67.4 126 38.1
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.0e-09 67.0 149 36.2
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 2.0e-09 67.0 77 53.2
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 2.0e-09 67.0 128 37.5
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 2.6e-09 66.6 143 33.6
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 2.6e-09 66.6 56 57.1
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 2.6e-09 66.6 51 60.8
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.6e-09 66.6 94 48.9
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.6e-09 66.6 94 48.9
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 2.6e-09 66.6 107 46.7
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 2.6e-09 66.6 104 49.0
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 3.4e-09 66.2 106 44.3
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.4e-09 66.2 153 34.0
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 3.4e-09 66.2 141 39.0
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 3.4e-09 66.2 56 60.7
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.4e-09 66.2 161 34.2
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.4e-09 65.9 78 48.7
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 4.4e-09 65.9 68 58.8
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 4.4e-09 65.9 97 49.5
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.4e-09 65.9 153 34.0
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 4.4e-09 65.9 88 46.6
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 4.4e-09 65.9 87 46.0
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 5.7e-09 65.5 47 72.3
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 7.5e-09 65.1 163 36.2
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 7.5e-09 65.1 92 44.6
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 7.5e-09 65.1 41 80.5
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 9.8e-09 64.7 172 37.2
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 9.8e-09 64.7 95 40.0
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 1.3e-08 64.3 93 46.2
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 1.3e-08 64.3 51 62.7
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 2.2e-08 63.5 75 53.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 2.2e-08 63.5 92 43.5
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 2.2e-08 63.5 51 62.7
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.8e-08 63.2 45 64.4
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 2.8e-08 63.2 58 60.3
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 3.7e-08 62.8 175 36.0
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 3.7e-08 62.8 112 41.1
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 4.8e-08 62.4 151 32.5
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 4.8e-08 62.4 88 43.2
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.8e-08 62.4 106 44.3
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 6.3e-08 62.0 99 45.5
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 1.1e-07 61.2 200 34.5
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.1e-07 61.2 156 35.3
SEGI_11879 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 1.1e-07 61.2 152 33.6
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.8e-07 60.5 129 34.9
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 1.8e-07 60.5 92 46.7
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 1.8e-07 60.5 117 35.9
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 2.4e-07 60.1 91 47.3
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 3.1e-07 59.7 60 53.3
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 4.1e-07 59.3 68 50.0
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 5.4e-07 58.9 60 53.3
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 7.0e-07 58.5 161 36.0
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 7.0e-07 58.5 107 39.3
DCAR_007387 Daucus carota HOM05D004206 ORTHO05D003325 1.2e-06 57.8 70 50.0
Migut.M01027 Erythranthe guttata HOM05D004206 ORTHO05D003325 1.6e-06 57.4 84 41.7
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 1.6e-06 57.4 77 54.5
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.0e-06 57.0 117 38.5
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 2.7e-06 56.6 67 52.2
Nn2g10438 Nelumbo nucifera HOM05D004206 ORTHO05D003325 3.5e-06 56.2 50 56.0
Os01g0814400 Oryza sativa ssp. japonica HOM05D033995 ORTHO05D003325 3.5e-06 56.2 127 39.4
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 3.5e-06 56.2 49 59.2
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 4.5e-06 55.8 68 51.5
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 4.5e-06 55.8 61 52.5
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 4.5e-06 55.8 61 52.5
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 4.5e-06 55.8 89 41.6
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 5.9e-06 55.5 138 34.8
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 5.9e-06 55.5 138 34.1
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 5.9e-06 55.5 118 39.0
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 7.7e-06 55.1 53 56.6
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 7.7e-06 55.1 53 56.6
MBI14_g07165_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 7.7e-06 55.1 88 46.6


User provided reference genes

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