Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0003870 Simmondsia chinensis HOM05D007186 ORTHO05D008970 6.4e-63 243.8 115 100.0
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 3.0e-28 128.6 82 65.9
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 1.9e-27 125.9 101 53.5
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.3e-27 125.2 93 57.0
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.3e-27 125.2 93 57.0
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.3e-27 125.2 93 57.0
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.3e-27 124.8 93 58.1
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 9.6e-27 123.6 82 63.4
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 1.3e-26 123.2 100 53.0
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 1.3e-26 123.2 91 54.9
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.1e-26 122.5 102 50.0
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 2.8e-26 122.1 102 51.0
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 2.8e-26 122.1 92 55.4
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 3.7e-26 121.7 83 55.4
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 3.7e-26 121.7 92 56.5
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 6.3e-26 120.9 91 57.1
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 6.3e-26 120.9 83 57.8
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 1.1e-25 120.2 91 52.7
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 2.4e-25 119.0 108 49.1
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 2.4e-25 119.0 91 57.1
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 3.1e-25 118.6 91 52.7
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 3.1e-25 118.6 91 56.0
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 3.1e-25 118.6 91 53.8
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 4.1e-25 118.2 107 49.5
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 5.3e-25 117.9 86 58.1
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 6.9e-25 117.5 81 63.0
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 9.0e-25 117.1 91 54.9
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 9.0e-25 117.1 91 53.8
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.2e-24 116.7 102 50.0
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 1.2e-24 116.7 92 48.9
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 2.0e-24 115.9 91 50.5
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 2.6e-24 115.5 105 48.6
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.4e-24 115.2 86 57.0
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 3.4e-24 115.2 81 56.8
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 4.5e-24 114.8 83 54.2
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 5.9e-24 114.4 83 55.4
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 5.9e-24 114.4 83 57.8
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 5.9e-24 114.4 100 51.0
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 7.6e-24 114.0 91 52.7
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 7.6e-24 114.0 84 54.8
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 1.0e-23 113.6 91 52.7
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 1.7e-23 112.8 91 56.0
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 2.2e-23 112.5 104 44.2
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 2.2e-23 112.5 81 56.8
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 2.2e-23 112.5 83 55.4
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 2.2e-23 112.5 83 55.4
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 2.2e-23 112.5 91 52.7
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 2.9e-23 112.1 100 50.0
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 2.9e-23 112.1 83 54.2
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 2.9e-23 112.1 102 51.0
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 3.8e-23 111.7 82 57.3
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 8.4e-23 110.5 91 49.5
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 8.4e-23 110.5 83 54.2
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 1.4e-22 109.8 91 49.5
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 1.9e-22 109.4 84 52.4
arahy.Tifrunner.gnm1.ann1.I316DY Arachis hypogaea HOM05D007186 ORTHO05D008970 4.2e-22 108.2 94 51.1
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 4.2e-22 108.2 91 47.3
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 1.2e-21 106.7 93 50.5
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 2.1e-21 105.9 100 46.0
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 2.1e-21 105.9 91 47.3
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 2.7e-21 105.5 83 53.0
DCAR_032166 Daucus carota HOM05D000693 ORTHO05D008970 2.7e-21 105.5 81 53.1
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 2.7e-21 105.5 79 54.4
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 3.5e-21 105.1 81 50.6
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 3.5e-21 105.1 83 53.0
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 3.5e-21 105.1 82 52.4
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 1.0e-20 103.6 90 50.0
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 1.8e-20 102.8 122 37.7
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 1.8e-20 102.8 82 50.0
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 2.3e-20 102.4 88 46.6
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 2.3e-20 102.4 88 46.6
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 3.0e-20 102.1 81 56.8
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 6.7e-20 100.9 83 51.8
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 6.7e-20 100.9 82 48.8
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 8.7e-20 100.5 88 46.6
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 1.9e-19 99.4 82 48.8
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 2.5e-19 99.0 112 42.0
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 3.3e-19 98.6 112 42.0
arahy.Tifrunner.gnm1.ann1.ZIY68Y Arachis hypogaea HOM05D007186 ORTHO05D008970 4.3e-19 98.2 92 48.9
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 4.3e-19 98.2 81 48.1
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 4.3e-19 98.2 78 51.3
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 1.6e-18 96.3 82 47.6
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 1.6e-18 96.3 82 47.6
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 1.6e-18 96.3 82 47.6
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 1.6e-18 96.3 82 47.6
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 2.8e-18 95.5 82 47.6
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 1.4e-17 93.2 82 50.0
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 1.5e-16 89.7 81 46.9
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 1.0e-15 87.0 83 49.4
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.9e-14 82.8 144 30.6
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 5.5e-14 81.3 71 47.9
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 1.6e-13 79.7 89 40.4
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 3.6e-13 78.6 80 43.8
Nn1g07413 Nelumbo nucifera HOM05D007186 ORTHO05D008970 1.0e-12 77.0 63 50.8
Mapoly0123s0026 Marchantia polymorpha HOM05D007186 ORTHO05D008970 2.3e-12 75.9 82 36.6
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 4.3e-11 71.6 90 42.2
arahy.Tifrunner.gnm1.ann1.5R4F72 Arachis hypogaea HOM05D007186 ORTHO05D008970 7.4e-11 70.9 92 41.3
SMO364G0535 Selaginella moellendorffii HOM05D007186 ORTHO05D008970 6.3e-10 67.8 91 36.3
Eucgr.K00669 Eucalyptus grandis HOM05D007186 ORTHO05D008970 9.1e-09 63.9 57 43.9
MCO11G099 Micromonas commoda HOM05D007186 ORTHO05D008970 8.5e-07 57.4 93 32.3
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 1.9e-06 56.2 30 80.0
Thhalv10002943m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 3.2e-06 55.5 56 39.3


User provided reference genes

Program Settings