Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 9.6e-58 226.5 105 100.0
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.7e-09 66.2 50 60.0
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 2.8e-09 65.5 49 61.2
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 2.8e-09 65.5 45 64.4
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 3.7e-09 65.1 45 62.2
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 4.9e-09 64.7 49 61.2
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 6.3e-09 64.3 45 60.0
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 6.3e-09 64.3 45 60.0
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 8.3e-09 63.9 50 58.0
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.4e-08 63.2 45 60.0
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 1.8e-08 62.8 46 60.9
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 3.1e-08 62.0 47 59.6
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 3.1e-08 62.0 45 64.4
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 3.1e-08 62.0 45 57.8
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 7.0e-08 60.8 46 65.2
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 9.2e-08 60.5 45 55.6
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 9.2e-08 60.5 45 62.2
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 9.2e-08 60.5 46 65.2
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 1.2e-07 60.1 45 60.0
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 1.2e-07 60.1 45 60.0
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 1.2e-07 60.1 44 65.9
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 2.0e-07 59.3 46 60.9
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 2.0e-07 59.3 46 60.9
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 2.0e-07 59.3 44 61.4
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 2.0e-07 59.3 45 62.2
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 2.0e-07 59.3 44 63.6
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 2.7e-07 58.9 45 60.0
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 2.7e-07 58.9 45 60.0
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 2.7e-07 58.9 45 60.0
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 2.7e-07 58.9 44 70.5
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 2.7e-07 58.9 45 60.0
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 3.5e-07 58.5 44 68.2
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 3.5e-07 58.5 44 68.2
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 3.5e-07 58.5 44 68.2
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 4.5e-07 58.2 45 62.2
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 4.5e-07 58.2 44 68.2
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 4.5e-07 58.2 45 64.4
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 5.9e-07 57.8 46 63.0
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 5.9e-07 57.8 44 63.6
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 5.9e-07 57.8 46 65.2
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 7.7e-07 57.4 47 59.6
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 7.7e-07 57.4 45 57.8
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 7.7e-07 57.4 47 59.6
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 7.7e-07 57.4 46 54.3
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 7.7e-07 57.4 47 59.6
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.0e-06 57.0 45 57.8
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.0e-06 57.0 45 57.8
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 1.0e-06 57.0 45 57.8
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 1.3e-06 56.6 38 68.4
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 1.3e-06 56.6 45 62.2
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 1.3e-06 56.6 45 57.8
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 1.3e-06 56.6 44 63.6
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 1.7e-06 56.2 45 60.0
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 1.7e-06 56.2 47 57.4
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.7e-06 56.2 38 65.8
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.7e-06 56.2 45 60.0
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 1.7e-06 56.2 38 65.8
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 2.3e-06 55.8 43 60.5
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 2.3e-06 55.8 45 57.8
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 2.3e-06 55.8 45 57.8
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 2.3e-06 55.8 45 57.8
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 2.3e-06 55.8 45 62.2
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 2.3e-06 55.8 45 57.8
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 2.9e-06 55.5 46 58.7
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 2.9e-06 55.5 45 55.6
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 3.8e-06 55.1 47 57.4
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 3.8e-06 55.1 47 57.4
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 5.0e-06 54.7 35 65.7
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 5.0e-06 54.7 47 55.3
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 5.0e-06 54.7 38 65.8
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 6.6e-06 54.3 45 57.8
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 8.6e-06 53.9 47 55.3
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 8.6e-06 53.9 37 62.2
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 8.6e-06 53.9 47 55.3
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 8.6e-06 53.9 47 55.3
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 8.6e-06 53.9 47 55.3
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 8.6e-06 53.9 47 55.3
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 8.6e-06 53.9 47 55.3
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 8.6e-06 53.9 53 50.9
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 8.6e-06 53.9 44 59.1
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 8.6e-06 53.9 45 60.0
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 8.6e-06 53.9 44 59.1


User provided reference genes

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