Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 1.8e-37 158.7 78 100.0
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 1.3e-22 109.4 78 67.9
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 1.4e-21 105.9 78 69.2
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 1.8e-21 105.5 81 65.4
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 3.1e-21 104.8 77 70.1
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 1.2e-20 102.8 73 65.8
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 1.2e-20 102.8 78 66.7
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 2.7e-20 101.7 63 74.6
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 3.5e-20 101.3 78 65.4
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 3.5e-20 101.3 78 65.4
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 4.5e-20 100.9 81 64.2
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 4.5e-20 100.9 78 66.7
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 4.5e-20 100.9 78 64.1
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 4.5e-20 100.9 78 64.1
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 4.5e-20 100.9 78 62.8
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 4.5e-20 100.9 78 61.5
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 5.9e-20 100.5 78 64.1
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 5.9e-20 100.5 79 65.8
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 5.9e-20 100.5 78 65.4
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 5.9e-20 100.5 78 67.9
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 1.3e-19 99.4 78 62.8
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 1.7e-19 99.0 78 62.8
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 2.9e-19 98.2 75 65.3
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 2.9e-19 98.2 80 63.8
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 3.8e-19 97.8 78 66.7
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 3.8e-19 97.8 78 62.8
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 5.0e-19 97.4 81 65.4
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 5.0e-19 97.4 74 60.8
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 6.6e-19 97.1 83 60.2
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 6.6e-19 97.1 78 61.5
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 1.1e-18 96.3 78 62.8
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 1.1e-18 96.3 78 61.5
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 3.3e-18 94.7 82 58.5
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 3.3e-18 94.7 72 65.3
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 3.3e-18 94.7 78 64.1
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 3.3e-18 94.7 79 62.0
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 3.3e-18 94.7 83 59.0
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 4.2e-18 94.4 78 60.3
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 5.5e-18 94.0 78 61.5
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 7.2e-18 93.6 78 62.8
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 7.2e-18 93.6 82 62.2
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 9.5e-18 93.2 75 61.3
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 9.5e-18 93.2 81 60.5
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 1.2e-17 92.8 88 56.8
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.6e-17 92.4 78 62.8
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.6e-17 92.4 78 59.0
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 2.1e-17 92.0 78 60.3
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 2.1e-17 92.0 81 63.0
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.6e-17 91.3 78 62.8
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 3.6e-17 91.3 80 62.5
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 4.7e-17 90.9 78 56.4
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 4.7e-17 90.9 78 60.3
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 6.1e-17 90.5 76 59.2
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.0e-16 89.7 78 57.7
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 1.0e-16 89.7 80 58.8
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 1.8e-16 89.0 58 72.4
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 2.3e-16 88.6 75 56.0
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 2.3e-16 88.6 81 58.0
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 3.0e-16 88.2 77 62.3
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 3.0e-16 88.2 78 56.4
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 4.0e-16 87.8 75 56.0
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 4.0e-16 87.8 76 61.8
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 6.8e-16 87.0 53 79.2
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 8.9e-16 86.7 80 60.0
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 1.2e-15 86.3 59 67.8
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 1.5e-15 85.9 71 62.0
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 1.5e-15 85.9 75 53.3
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 3.4e-15 84.7 75 54.7
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 3.4e-15 84.7 79 54.4
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 3.4e-15 84.7 66 59.1
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 4.4e-15 84.3 75 56.0
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 7.5e-15 83.6 75 54.7
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 7.5e-15 83.6 75 54.7
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 7.5e-15 83.6 75 54.7
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 9.8e-15 83.2 78 53.8
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 9.8e-15 83.2 54 70.4
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 9.8e-15 83.2 85 54.1
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 2.9e-14 81.6 66 60.6
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 2.9e-14 81.6 78 52.6
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 3.7e-14 81.3 78 53.8
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 6.3e-14 80.5 77 50.6
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 1.1e-13 79.7 122 41.8
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 1.4e-13 79.3 77 50.6
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.4e-13 79.3 82 50.0
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 4.1e-13 77.8 91 48.4
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 7.8e-12 73.6 76 50.0
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 2.3e-11 72.0 59 50.8
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 3.9e-11 71.2 46 71.7
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 9.5e-10 66.6 116 37.9
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.0e-08 63.2 79 49.4
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 1.7e-06 55.8 41 63.4


User provided reference genes

Program Settings