Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 4.9e-89 331.3 186 100.0
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 8.0e-47 191.0 189 59.3
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 9.1e-43 177.6 185 59.5
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 3.8e-41 172.2 183 57.9
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.8e-36 156.0 174 59.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 7.0e-35 151.4 200 51.5
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 7.0e-35 151.4 128 66.4
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.0e-35 151.4 193 52.8
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-34 150.6 128 66.4
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.7e-34 149.4 194 52.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.7e-33 146.7 184 54.9
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.7e-33 146.7 135 61.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.0e-33 145.2 192 50.5
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.0e-33 145.2 186 51.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 8.5e-33 144.4 187 53.5
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.9e-32 143.3 114 71.9
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.9e-32 143.3 131 64.1
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.2e-32 142.5 95 78.9
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 4.2e-32 142.1 186 52.2
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.5e-32 141.7 92 81.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 5.5e-32 141.7 139 59.0
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 5.5e-32 141.7 192 49.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 7.2e-32 141.4 115 67.0
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 7.2e-32 141.4 186 51.6
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 7.2e-32 141.4 117 70.1
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.2e-31 140.6 180 54.4
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.2e-31 140.6 155 59.4
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-31 140.2 99 72.7
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.6e-31 140.2 109 68.8
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.6e-31 140.2 117 69.2
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.6e-31 140.2 117 70.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.6e-31 140.2 96 75.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 2.1e-31 139.8 185 50.8
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.7e-31 139.4 123 68.3
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.7e-31 139.4 95 78.9
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.6e-31 139.0 107 69.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.6e-31 139.0 99 71.7
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 4.7e-31 138.7 102 70.6
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 4.7e-31 138.7 149 57.0
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.7e-31 138.7 149 57.0
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.7e-31 138.7 135 64.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 6.1e-31 138.3 94 74.5
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 6.1e-31 138.3 190 50.0
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 6.1e-31 138.3 141 63.8
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 6.1e-31 138.3 193 52.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 6.1e-31 138.3 115 65.2
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 8.0e-31 137.9 94 73.4
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.0e-30 137.5 107 68.2
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.0e-30 137.5 108 69.4
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.4e-30 137.1 192 50.5
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-30 136.7 97 73.2
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 4.0e-30 135.6 127 63.8
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 4.0e-30 135.6 92 75.0
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.0e-30 135.6 112 67.9
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 4.0e-30 135.6 193 49.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 4.0e-30 135.6 221 46.6
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.2e-30 135.2 130 63.8
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.8e-30 134.8 133 59.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.8e-30 134.8 128 59.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 8.8e-30 134.4 138 59.4
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.2e-29 134.0 96 71.9
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-29 134.0 96 71.9
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.2e-29 134.0 96 71.9
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.0e-29 133.3 149 57.0
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 2.0e-29 133.3 131 63.4
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.0e-29 133.3 131 62.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 2.0e-29 133.3 145 56.6
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.6e-29 132.9 133 59.4
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.6e-29 132.9 119 66.4
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.6e-29 132.9 120 63.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.4e-29 132.5 141 57.4
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 3.4e-29 132.5 95 73.7
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 3.4e-29 132.5 95 73.7
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.4e-29 132.5 195 49.2
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.4e-29 132.5 128 65.6
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 4.4e-29 132.1 97 70.1
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 4.4e-29 132.1 188 47.9
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 5.7e-29 131.7 128 65.6
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.5e-29 131.3 133 58.6
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 7.5e-29 131.3 129 57.4
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 9.8e-29 131.0 188 50.0
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 9.8e-29 131.0 180 51.1
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.3e-28 130.6 130 57.7
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.7e-28 130.2 201 48.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 2.2e-28 129.8 195 49.2
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 2.8e-28 129.4 128 60.9
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 2.8e-28 129.4 91 73.6
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 3.7e-28 129.0 112 65.2
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 3.7e-28 129.0 192 53.6
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 6.3e-28 128.3 127 57.5
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 8.3e-28 127.9 132 55.3
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 8.3e-28 127.9 134 61.9
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.4e-27 126.3 181 46.4
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.4e-27 126.3 98 70.4
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.4e-27 125.2 102 70.6
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 5.4e-27 125.2 80 83.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 9.1e-27 124.4 132 58.3
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.6e-26 123.6 100 71.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.0e-26 123.2 132 58.3
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 2.7e-26 122.9 143 53.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 7.7e-26 121.3 169 50.9
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.0e-25 120.9 190 46.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 6.6e-25 118.2 79 74.7
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-24 117.1 88 70.5
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.3e-24 115.9 131 56.5
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 7.2e-24 114.8 107 64.5
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.2e-23 114.0 89 62.9
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 2.1e-23 113.2 153 45.8
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 6.1e-23 111.7 72 79.2
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.0e-22 110.9 144 49.3
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.2e-20 103.2 72 76.4
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.8e-19 100.1 103 52.4
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.1e-19 99.4 145 46.2
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 7.0e-19 98.2 77 62.3
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.5e-18 95.9 57 86.0
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.5e-18 95.5 147 42.9
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.0e-17 94.4 129 45.0
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 4.0e-14 82.4 104 52.9
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 7.5e-13 78.2 120 40.0
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 9.8e-13 77.8 65 61.5
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.8e-13 77.8 144 42.4
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 8.3e-12 74.7 62 67.7
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.1e-11 74.3 55 76.4
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 3.5e-10 69.3 148 41.2
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.7e-09 67.0 43 81.4
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 5.6e-08 62.0 129 41.1
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.6e-07 60.5 127 33.1
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 2.3e-06 56.6 140 37.9
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.1e-06 56.2 93 41.9


User provided reference genes

Program Settings